C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: primase and polymerase (DNA-directed)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164306 PRIMPOL 9606 + 4:184649613-184694963 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314970 PRIMPOL-001 184649613-184694952 protein_coding
  ENST00000503752 PRIMPOL-005 184649695-184694916 protein_coding
  ENST00000506278 PRIMPOL-006 184649777-184678386 nonsense_mediated_decay
  ENST00000508001 PRIMPOL-011 184678277-184694592 protein_coding
  ENST00000509002 PRIMPOL-004 184649738-184694952 nonsense_mediated_decay
  ENST00000509538 PRIMPOL-008 184649756-184657654 retained_intron
  ENST00000510864 PRIMPOL-010 184694293-184694952 processed_transcript
  ENST00000512658 PRIMPOL-009 184691368-184694758 retained_intron
  ENST00000512834 PRIMPOL-002 184649725-184694952 protein_coding
  ENST00000515152 PRIMPOL-007 184649781-184672268 nonsense_mediated_decay
  ENST00000515774 PRIMPOL-003 184649667-184694963 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000314970ENST00000503752ENST00000506278ENST00000508001ENST00000512834ENST00000515774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000314970 N/A N/A 0.627±0.00 0.542±0.00 1.093±0.00 N/A N/A N/A N/A N/A N/A 1.106±0.00 0.961±0.00
ENST00000503752 0.529±0.00 1.266±0.00 N/A 1.127±0.00 1.413±0.00 1.765±0.00 0.542±0.41 1.177±0.00 0.528±0.11 0.750±0.00 N/A 2.336±0.80 1.153±0.00
ENST00000506278 0.835±0.00 1.821±0.00 2.226±0.00 1.410±0.00 2.294±0.00 1.262±0.00 0.324±0.00 N/A 2.281±0.00 1.370±0.00 0.976±0.00 3.205±0.00 N/A
ENST00000508001 1.368±0.00 N/A N/A 1.862±0.00 N/A 4.041±0.00 N/A 2.778±0.00 0.879±0.00 N/A 1.324±0.00 N/A N/A
ENST00000512834 0.932±0.00 N/A N/A N/A N/A 0.951±0.00 N/A 0.702±0.00 0.185±0.00 0.532±0.00 0.792±0.00 N/A N/A
ENST00000515774 N/A N/A N/A 0.496±0.00 N/A N/A 0.479±0.00 0.888±0.00 1.318±0.00 N/A N/A 0.918±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094W CIL_00094W_0001 VISTA 4:184083896-184687060
CIL_00097G CIL_00097G_0001 VISTA 4:184147184-184748475

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003887 IDA DNA-directed DNA polymerase activity
GO:0003896 IDA:IEA DNA primase activity
GO:0005634 IDA nucleus
GO:0005759 IDA mitochondrial matrix
GO:0006260 IEA DNA replication
GO:0006264 IMP mitochondrial DNA replication
GO:0006269 IEA DNA replication, synthesis of RNA primer
GO:0009411 IDA response to UV
GO:0019985 IMP translesion synthesis
GO:0030145 TAS manganese ion binding
GO:0031297 IMP replication fork processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033273 primpol primase and polymerase (DNA-directed) protein_coding Danio_rerio
ENSMUSG00000038225 Primpol primase and polymerase (DNA-directed) protein_coding Mus_musculus

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