C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: primase and polymerase (DNA-directed)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503752 PRIMPOL-005 ENSG00000164306 9606 + 4:184649695-184694916 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000503752
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000503752 0.529±0.00 1.266±0.00 1.127±0.00 1.413±0.00 1.765±0.00 0.542±0.41 1.177±0.00 0.528±0.11 0.750±0.00 2.336±0.80 1.153±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094W CIL_00094W_0001 VISTA 4:184083896-184687060
CIL_00097G CIL_00097G_0001 VISTA 4:184147184-184748475

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003887 IDA DNA-directed DNA polymerase activity
GO:0003896 IDA:IEA DNA primase activity
GO:0005634 IDA nucleus
GO:0005759 IDA mitochondrial matrix
GO:0006260 IEA DNA replication
GO:0006264 IMP mitochondrial DNA replication
GO:0006269 IEA DNA replication, synthesis of RNA primer
GO:0009411 IDA response to UV
GO:0019985 IMP translesion synthesis
GO:0030145 TAS manganese ion binding
GO:0031297 IMP replication fork processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040468 Primpol-001 protein_coding Mus_musculus 0 688
ENSMUST00000136335 Primpol-003 retained_intron Mus_musculus 0 638
ENSMUST00000125319 Primpol-004 protein_coding Mus_musculus 0 359

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