C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: primase and polymerase (DNA-directed)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038225 Primpol 10090 - 8:46575579-46617212 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040468 Primpol-001 46575579-46617200 protein_coding
  ENSMUST00000123328 Primpol-005 46586653-46592613 processed_transcript
  ENSMUST00000125319 Primpol-004 46605149-46613015 protein_coding
  ENSMUST00000132472 Primpol-002 46610778-46617212 retained_intron
  ENSMUST00000136335 Primpol-003 46576162-46617200 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040468ENSMUST00000136335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040468 N/A 0.236±0.00 0.816±0.41 0.942±0.04 N/A 0.501±0.00 0.104±0.01 0.175±0.00 1.575±1.06 N/A 0.352±0.11 1.635±1.05 1.435±0.25 2.253±0.00
ENSMUST00000136335 0.699±0.26 1.029±0.24 0.933±0.01 0.720±0.00 0.633±0.54 0.766±0.41 0.243±0.09 0.513±0.23 1.195±0.69 0.809±0.31 0.090±0.02 1.158±0.47 1.665±0.44 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097G CIL_00097G_0002 VISTA 8:46470571-47072246
CIL_00094W CIL_00094W_0002 VISTA 8:46548055-47151393

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003887 ISS DNA-directed DNA polymerase activity
GO:0003896 ISS DNA primase activity
GO:0005634 ISS nucleus
GO:0005759 ISS mitochondrial matrix
GO:0006264 ISS mitochondrial DNA replication
GO:0006269 IEA DNA replication, synthesis of RNA primer
GO:0009411 ISS response to UV
GO:0019985 ISS translesion synthesis
GO:0031297 IEA replication fork processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033273 primpol primase and polymerase (DNA-directed) protein_coding Danio_rerio
ENSG00000164306 PRIMPOL primase and polymerase (DNA-directed) protein_coding Homo_sapiens

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