C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 35 (CMP-sialic acid transporter), member A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164414 SLC35A1 9606 + 6:87470623-87512336 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369552 SLC35A1-001 87472977-87512336 protein_coding
  ENST00000369556 SLC35A1-201 87472925-87512330 protein_coding
  ENST00000369557 SLC35A1-202 87472925-87512330 protein_coding
  ENST00000464978 SLC35A1-002 87470623-87511803 processed_transcript
  ENST00000544441 SLC35A1-203 87473004-87511526 protein_coding
  ENST00000622775 SLC35A1-204 87472925-87512330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369552ENST00000369556ENST00000369557ENST00000622775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369552 3.797±0.00 2.534±0.00 1.313±0.00 2.319±0.18 4.232±0.03 6.271±1.22 1.459±0.89 4.513±1.78 2.573±0.25 7.258±1.07 0.954±0.00 6.365±3.20 4.730±0.54 11.102±0.00
ENST00000369556 N/A 1.665±0.00 N/A 1.822±0.00 N/A 1.992±0.00 1.450±0.00 4.814±0.00 N/A N/A 0.536±0.00 4.793±0.00 N/A N/A
ENST00000369557 N/A 1.217±0.00 N/A 1.393±0.00 N/A N/A 0.217±0.00 N/A 1.560±0.00 N/A 0.729±0.30 N/A N/A N/A
ENST00000622775 N/A N/A N/A N/A N/A N/A N/A N/A 1.231±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BP CIL_0006BP_0002 CGP 6:87408012-87512336
CIL_0006BQ CIL_0006BQ_0002 CGP 6:87470623-87590003

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA:TAS Golgi membrane
GO:0005338 IEA nucleotide-sugar transmembrane transporter activity
GO:0005351 IEA sugar:proton symporter activity
GO:0005456 TAS CMP-N-acetylneuraminate transmembrane transporter activity
GO:0005794 TAS Golgi apparatus
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006464 TAS cellular protein modification process
GO:0008643 IEA carbohydrate transport
GO:0015780 IEA nucleotide-sugar transport
GO:0015782 TAS CMP-N-acetylneuraminate transport
GO:0015992 IEA proton transport
GO:0016021 IEA integral component of membrane
GO:0055085 TAS:IEA transmembrane transport
GO:1901679 IEA nucleotide transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040180 slc35a1 solute carrier family 35 (CMP-sialic acid transporter), member A1 protein_coding Danio_rerio
ENSMUSG00000028293 Slc35a1 solute carrier family 35 (CMP-sialic acid transporter), member 1 protein_coding Mus_musculus

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