C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35 (CMP-sialic acid transporter), member A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369552 SLC35A1-001 ENSG00000164414 9606 + 6:87472977-87512336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369552
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369552 3.797±0.00 2.534±0.00 1.313±0.00 2.319±0.18 4.232±0.03 6.271±1.22 1.459±0.89 4.513±1.78 2.573±0.25 7.258±1.07 0.954±0.00 6.365±3.20 4.730±0.54 11.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BP CIL_0006BP_0002 CGP 6:87408012-87512336
CIL_0006BQ CIL_0006BQ_0002 CGP 6:87470623-87590003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA:TAS Golgi membrane
GO:0005338 IEA nucleotide-sugar transmembrane transporter activity
GO:0005351 IEA sugar:proton symporter activity
GO:0005456 TAS CMP-N-acetylneuraminate transmembrane transporter activity
GO:0005794 TAS Golgi apparatus
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006464 TAS cellular protein modification process
GO:0008643 IEA carbohydrate transport
GO:0015780 IEA nucleotide-sugar transport
GO:0015782 TAS CMP-N-acetylneuraminate transport
GO:0015992 IEA proton transport
GO:0016021 IEA integral component of membrane
GO:0055085 TAS:IEA transmembrane transport
GO:1901679 IEA nucleotide transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029970 Slc35a1-001 protein_coding Mus_musculus 0 1199
ENSMUST00000124456 Slc35a1-004 processed_transcript Mus_musculus 0 579
ENSMUST00000151549 Slc35a1-002 processed_transcript Mus_musculus 0 562
ENSMUST00000126033 Slc35a1-005 protein_coding Mus_musculus 0 475

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