C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAP30-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164576 SAP30L 9606 + 5:154445957-154461054 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297109 SAP30L-001 154445957-154461054 protein_coding
  ENST00000426761 SAP30L-004 154446545-154456331 protein_coding
  ENST00000440364 SAP30L-003 154446545-154456331 protein_coding
  ENST00000517926 SAP30L-002 154453078-154456268 retained_intron
  ENST00000519683 SAP30L-007 154446622-154451316 retained_intron
  ENST00000520159 SAP30L-006 154446554-154453485 processed_transcript
  ENST00000520731 SAP30L-009 154452443-154456149 processed_transcript
  ENST00000523029 SAP30L-008 154452398-154456149 retained_intron
  ENST00000523198 SAP30L-005 154446545-154455968 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297109ENST00000440364ENST00000519683ENST00000520159ENST00000520731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297109 6.117±0.00 2.935±0.00 0.942±0.00 3.317±2.34 3.653±1.92 5.566±3.55 3.438±2.81 3.717±2.93 2.470±0.29 2.963±1.69 3.189±2.02 4.468±4.02 3.388±0.91 5.583±2.62
ENST00000440364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.516±0.00 N/A N/A N/A
ENST00000519683 N/A N/A N/A N/A N/A N/A N/A 6.045±0.00 N/A N/A N/A N/A N/A N/A
ENST00000520159 N/A N/A N/A N/A N/A N/A 1.526±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000520731 N/A N/A N/A N/A N/A 6.731±0.00 N/A N/A 6.128±0.00 N/A N/A 11.201±0.00 17.589±0.00 51.825±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0001 VISTA 5:153896309-154498445
CIL_00094E CIL_00094E_0001 VISTA 5:153896347-154498404
CIL_0001UJ CIL_0001UJ_0001 CGP 5:154190730-154461054
CIL_00099I CIL_00099I_0001 VISTA 5:154192067-154792416
CIL_00088D CIL_00088D_0001 VISTA 5:154298500-154906275
CIL_0001UK CIL_0001UK_0001 CGP 5:154445957-154478264

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030213 sap30l sap30-like protein_coding Danio_rerio
ENSMUSG00000020519 Sap30l SAP30-like protein_coding Mus_musculus

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