C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAP30-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297109 SAP30L-001 ENSG00000164576 9606 + 5:154445957-154461054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297109
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297109 6.117±0.00 2.935±0.00 0.942±0.00 3.317±2.34 3.653±1.92 5.566±3.55 3.438±2.81 3.717±2.93 2.470±0.29 2.963±1.69 3.189±2.02 4.468±4.02 3.388±0.91 5.583±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0001 VISTA 5:153896309-154498445
CIL_00094E CIL_00094E_0001 VISTA 5:153896347-154498404
CIL_0001UJ CIL_0001UJ_0001 CGP 5:154190730-154461054
CIL_00099I CIL_00099I_0001 VISTA 5:154192067-154792416
CIL_00088D CIL_00088D_0001 VISTA 5:154298500-154906275
CIL_0001UK CIL_0001UK_0001 CGP 5:154445957-154478264

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020826 Sap30l-001 protein_coding Mus_musculus 0 870
ENSDART00000029763 sap30l-001 protein_coding Danio_rerio 0 302

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