C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphorylated adaptor for RNA export
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164902 PHAX 9606 + 5:126600268-126627252 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297540 PHAX-001 126600268-126627252 protein_coding
  ENST00000505674 PHAX-004 126603561-126617333 retained_intron
  ENST00000511371 PHAX-007 126608357-126625209 retained_intron
  ENST00000513813 PHAX-005 126617235-126625478 retained_intron
  ENST00000514725 PHAX-006 126600925-126604064 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297540ENST00000505674ENST00000511371ENST00000513813ENST00000514725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297540 2.730±0.00 3.739±0.00 0.490±0.00 2.938±0.83 2.531±1.41 2.294±1.56 1.717±1.21 2.975±1.83 2.209±0.46 1.085±0.23 2.026±0.00 3.248±2.25 2.604±0.36 3.657±1.57
ENST00000505674 5.364±0.00 4.703±0.00 1.829±0.00 9.419±1.10 5.628±2.67 6.045±0.87 2.093±0.89 5.041±1.71 3.986±0.78 3.142±0.00 1.793±0.79 3.830±1.24 6.872±4.53 9.224±3.24
ENST00000511371 3.812±0.00 2.747±0.00 3.500±0.00 5.393±0.79 1.986±0.00 4.984±0.79 1.182±0.44 2.760±0.00 2.189±0.00 2.397±1.27 1.669±0.00 4.529±3.20 N/A 6.392±0.08
ENST00000513813 N/A N/A N/A N/A N/A N/A N/A 2.621±0.00 N/A N/A N/A 1.723±0.45 4.130±1.87 N/A
ENST00000514725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.260±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HH CIL_0000HH_0002 CGP 5:126541841-126627252
CIL_00041P CIL_00041P_0001 CGP 5:126600268-126636287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 TAS spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006408 TAS snRNA export from nucleus
GO:0010467 TAS gene expression
GO:0015031 IEA protein transport
GO:0015643 IEA toxic substance binding
GO:0016070 TAS RNA metabolic process
GO:0034660 TAS ncRNA metabolic process
GO:0043025 IEA neuronal cell body
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044298 phax phosphorylated adaptor for RNA export protein_coding Danio_rerio
ENSMUSG00000008301 Phax phosphorylated adaptor for RNA export protein_coding Mus_musculus

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