C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphorylated adaptor for RNA export
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297540 PHAX-001 ENSG00000164902 9606 + 5:126600268-126627252 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297540 2.730±0.00 3.739±0.00 0.490±0.00 2.938±0.83 2.531±1.41 2.294±1.56 1.717±1.21 2.975±1.83 2.209±0.46 1.085±0.23 2.026±0.00 3.248±2.25 2.604±0.36 3.657±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HH CIL_0000HH_0002 CGP 5:126541841-126627252
CIL_00041P CIL_00041P_0001 CGP 5:126600268-126636287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 TAS spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006408 TAS snRNA export from nucleus
GO:0010467 TAS gene expression
GO:0015031 IEA protein transport
GO:0015643 IEA toxic substance binding
GO:0016070 TAS RNA metabolic process
GO:0034660 TAS ncRNA metabolic process
GO:0043025 IEA neuronal cell body
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008445 Phax-001 protein_coding Mus_musculus 0 1009
ENSMUST00000130163 Phax-002 protein_coding Mus_musculus 0 974

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