C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165091 TMC1 9606 + 9:72521801-72836351 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297784 TMC1-001 72521801-72836351 protein_coding
  ENST00000340019 TMC1-201 72616266-72836351 protein_coding
  ENST00000469455 TMC1-005 72808883-72830519 processed_transcript
  ENST00000486417 TMC1-002 72792038-72836320 processed_transcript
  ENST00000492418 TMC1-004 72628025-72651618 processed_transcript
  ENST00000497073 TMC1-003 72577788-72628344 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyOvaryPlacentaTestisENST00000297784ENST00000340019ENST00000469455ENST00000486417ENST00000492418ENST00000497073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Ovary Placenta Testis
ENST00000297784 0.022±0.00 0.039±0.00 N/A 0.102±0.00 0.038±0.00 0.035±0.00 0.053±0.00 0.018±0.00 0.117±0.00 0.316±0.00
ENST00000340019 N/A N/A N/A 0.117±0.00 N/A N/A N/A 0.040±0.02 0.030±0.00 N/A
ENST00000469455 N/A N/A N/A N/A N/A 0.080±0.00 0.446±0.00 0.061±0.00 0.308±0.12 N/A
ENST00000486417 N/A N/A 0.091±0.00 N/A N/A N/A 0.066±0.00 0.052±0.00 0.165±0.03 0.099±0.00
ENST00000492418 N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A
ENST00000497073 0.124±0.00 N/A N/A N/A 0.304±0.00 N/A 0.184±0.00 0.191±0.09 N/A 0.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QU CIL_0007QU_0001 VISTA 9:72062282-72663099

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0009897 IEA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0032426 IEA stereocilium bundle tip
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0060005 IEA vestibular reflex
GO:0060117 IEA auditory receptor cell development
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056386 tmc1 transmembrane channel-like 1 protein_coding Danio_rerio
ENSMUSG00000024749 Tmc1 transmembrane channel-like gene family 1 protein_coding Mus_musculus

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