C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165097 KDM1B 9606 + 6:18155329-18223853 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297792 KDM1B-002 18155452-18223853 protein_coding
  ENST00000449850 KDM1B-004 18185788-18222115 protein_coding
  ENST00000546309 KDM1B-003 18155329-18222043 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297792ENST00000449850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297792 1.436±0.00 0.823±0.00 N/A 1.228±0.00 0.570±0.00 2.068±0.00 0.544±0.26 N/A 0.682±0.00 0.593±0.00 1.404±0.00 2.092±0.95 0.284±0.06 2.167±0.00
ENST00000449850 1.373±0.00 1.089±0.00 0.759±0.00 1.965±0.69 N/A 3.380±0.00 0.979±0.16 1.616±0.00 2.251±0.00 1.959±0.00 1.712±0.48 2.611±0.90 0.539±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090E CIL_00090E_0001 VISTA 6:17631749-18233261
CIL_0003RU CIL_0003RU_0001 CGP 6:18128311-18223853
CIL_0003RV CIL_0003RV_0001 CGP 6:18155329-18264823

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006349 ISS regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008033 IEA tRNA processing
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0034648 ISS histone demethylase activity (H3-dimethyl-K4 specific)
GO:0034649 ISS histone demethylase activity (H3-monomethyl-K4 specific)
GO:0034720 ISS histone H3-K4 demethylation
GO:0043046 IEA DNA methylation involved in gamete generation
GO:0044030 ISS regulation of DNA methylation
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000038080 Kdm1b lysine (K)-specific demethylase 1B protein_coding Mus_musculus

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