C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038080 Kdm1b 10090 + 13:47043499-47084613 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037025 Kdm1b-001 47043499-47084600 protein_coding
  ENSMUST00000128977 Kdm1b-003 47066458-47084613 processed_transcript
  ENSMUST00000131120 Kdm1b-005 47064138-47072283 retained_intron
  ENSMUST00000143518 Kdm1b-002 47063006-47084596 protein_coding
  ENSMUST00000143868 Kdm1b-004 47043570-47053730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037025ENSMUST00000128977ENSMUST00000131120ENSMUST00000143518ENSMUST00000143868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037025 2.127±0.70 5.342±0.87 8.566±0.12 7.979±5.72 6.972±3.19 9.142±3.74 2.261±0.59 5.736±0.99 4.585±2.66 3.339±1.38 2.193±0.35 7.611±3.55 7.316±4.49 1.189±0.16
ENSMUST00000128977 N/A N/A 37.897±1.18 0.505±0.00 0.638±0.00 6.449±0.23 N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A
ENSMUST00000131120 N/A N/A N/A 2.776±0.00 N/A N/A N/A N/A N/A N/A N/A 11.893±0.00 13.331±1.54 2.612±0.00
ENSMUST00000143518 N/A N/A N/A 0.361±0.00 N/A N/A N/A N/A N/A N/A 0.485±0.07 1.802±0.19 4.593±1.02 0.400±0.00
ENSMUST00000143868 N/A N/A N/A 4.571±0.00 N/A N/A N/A N/A N/A N/A N/A 19.679±0.00 27.736±0.41 3.068±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090E CIL_00090E_0002 VISTA 13:46584783-47186478
CIL_0008X6 CIL_0008X6_0002 VISTA 13:47010584-47612217
CIL_0003RL CIL_0003RL_0002 CGP 13:47012558-47044737
CIL_0003RU CIL_0003RU_0002 CGP 13:47025170-47084613
CIL_0003RV CIL_0003RV_0002 CGP 13:47043499-47106201

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0006349 IMP regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008270 IDA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0034648 IDA histone demethylase activity (H3-dimethyl-K4 specific)
GO:0034649 IDA histone demethylase activity (H3-monomethyl-K4 specific)
GO:0034720 IDA histone H3-K4 demethylation
GO:0043046 IMP DNA methylation involved in gamete generation
GO:0044030 IMP regulation of DNA methylation
GO:0050660 IDA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000165097 KDM1B lysine (K)-specific demethylase 1B protein_coding Homo_sapiens

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