C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449850 KDM1B-004 ENSG00000165097 9606 + 6:18185788-18222115 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000449850
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000449850 1.373±0.00 1.089±0.00 0.759±0.00 1.965±0.69 3.380±0.00 0.979±0.16 1.616±0.00 2.251±0.00 1.959±0.00 1.712±0.48 2.611±0.90 0.539±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090E CIL_00090E_0001 VISTA 6:17631749-18233261
CIL_0003RU CIL_0003RU_0001 CGP 6:18128311-18223853
CIL_0003RV CIL_0003RV_0001 CGP 6:18155329-18264823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0016491 IEA oxidoreductase activity
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037025 Kdm1b-001 protein_coding Mus_musculus 0 2132
ENSMUST00000128977 Kdm1b-003 processed_transcript Mus_musculus 0 1053
ENSMUST00000143518 Kdm1b-002 protein_coding Mus_musculus 0 926
ENSMUST00000131120 Kdm1b-005 retained_intron Mus_musculus 0 713

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