C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297792 KDM1B-002 ENSG00000165097 9606 + 6:18155452-18223853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000297792
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000297792 1.436±0.00 0.823±0.00 1.228±0.00 0.570±0.00 2.068±0.00 0.544±0.26 0.682±0.00 0.593±0.00 1.404±0.00 2.092±0.95 0.284±0.06 2.167±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090E CIL_00090E_0001 VISTA 6:17631749-18233261
CIL_0003RU CIL_0003RU_0001 CGP 6:18128311-18223853
CIL_0003RV CIL_0003RV_0001 CGP 6:18155329-18264823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0006349 ISS regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008033 IEA tRNA processing
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0034648 ISS histone demethylase activity (H3-dimethyl-K4 specific)
GO:0034649 ISS histone demethylase activity (H3-monomethyl-K4 specific)
GO:0034720 ISS histone H3-K4 demethylation
GO:0043046 IEA DNA methylation involved in gamete generation
GO:0044030 ISS regulation of DNA methylation
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143518 Kdm1b-002 protein_coding Mus_musculus 0 1395
ENSMUST00000128977 Kdm1b-003 processed_transcript Mus_musculus 0 983
ENSMUST00000037025 Kdm1b-001 protein_coding Mus_musculus 0 983
ENSMUST00000143868 Kdm1b-004 protein_coding Mus_musculus 0 532
ENSMUST00000131120 Kdm1b-005 retained_intron Mus_musculus 0 327

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