C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: patched domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165186 PTCHD1 9606 + X:23334015-23404372 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379361 PTCHD1-002 23334016-23404372 protein_coding
  ENST00000456522 PTCHD1-001 23335069-23393108 protein_coding
  ENST00000616022 PTCHD1-201 23334015-23381431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000379361ENST00000456522ENST00000616022
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000379361 0.127±0.00 0.188±0.00 0.007±0.00 0.898±0.03 0.361±0.14 0.037±0.00 1.843±0.00 N/A 0.019±0.00 0.015±0.00 0.003±0.00 0.209±0.00
ENST00000456522 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 0.062±0.00 0.686±0.00
ENST00000616022 N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.107±0.00 N/A 0.160±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005886 IDA plasma membrane
GO:0007224 IDA smoothened signaling pathway
GO:0008158 IEA hedgehog receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0050890 IMP cognition

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018066 ptchd1 patched domain containing 1 protein_coding Danio_rerio
ENSMUSG00000041552 Ptchd1 patched domain containing 1 protein_coding Mus_musculus

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