C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patched domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379361 PTCHD1-002 ENSG00000165186 9606 + X:23334016-23404372 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverMuscleOvaryPlacentaTestisENST00000379361
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000379361 0.127±0.00 0.188±0.00 0.007±0.00 0.898±0.03 0.361±0.14 0.037±0.00 1.843±0.00 0.019±0.00 0.015±0.00 0.003±0.00 0.209±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005886 IDA plasma membrane
GO:0007224 IDA smoothened signaling pathway
GO:0008158 IEA hedgehog receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0050890 IMP cognition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038665 Ptchd1-001 protein_coding Mus_musculus 0 4165
ENSMUST00000170236 Ptchd1-003 protein_coding Mus_musculus 0 2573
ENSMUST00000141356 Ptchd1-002 processed_transcript Mus_musculus 0 350
ENSDART00000146055 ptchd4-001 protein_coding Danio_rerio 0.000000000000007 90
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000005 60

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