C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PCF11 cleavage and polyadenylation factor subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165494 PCF11 9606 + 11:83156988-83187451 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298281 PCF11-001 83156988-83187451 protein_coding
  ENST00000528336 PCF11-007 83180422-83183059 retained_intron
  ENST00000530304 PCF11-002 83157143-83168687 protein_coding
  ENST00000530660 PCF11-003 83157127-83168938 protein_coding
  ENST00000530906 PCF11-006 83171251-83181927 protein_coding
  ENST00000533018 PCF11-005 83157159-83163785 protein_coding
  ENST00000620955 PCF11-201 83157143-83168686 protein_coding
  ENST00000624931 PCF11-004 83157160-83158879 TEC

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298281ENST00000528336ENST00000530304ENST00000530660ENST00000620955ENST00000624931
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298281 6.547±0.00 4.954±0.00 N/A 9.073±0.00 5.214±0.28 N/A 2.721±0.00 5.574±1.00 2.454±0.21 2.506±0.56 0.656±0.04 3.577±1.22 1.992±0.49 N/A
ENST00000528336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.724±0.00 22.640±0.00 109.435±0.00
ENST00000530304 N/A N/A 4.141±0.00 N/A N/A N/A N/A N/A 4.406±0.00 N/A N/A 4.714±0.00 N/A N/A
ENST00000530660 N/A N/A 3.019±0.00 N/A N/A N/A 2.939±0.00 N/A 4.572±0.00 N/A 1.343±0.00 N/A N/A 25.200±0.00
ENST00000620955 N/A N/A 4.278±0.00 N/A N/A 7.124±0.00 N/A N/A 4.485±0.00 7.696±0.00 N/A 4.774±0.00 N/A N/A
ENST00000624931 N/A 27.287±0.00 N/A N/A N/A N/A N/A N/A N/A 27.520±0.00 5.063±0.17 26.374±0.00 7.162±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005654 TAS nucleoplasm
GO:0005849 NAS mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006379 NAS mRNA cleavage
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044625 pcf11 cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000041328 Pcf11 cleavage and polyadenylation factor subunit homolog (S. cerevisiae) protein_coding Mus_musculus

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