C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PCF11 cleavage and polyadenylation factor subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620955 PCF11-201 ENSG00000165494 9606 + 11:83157143-83168686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonLiverLungOvaryENST00000620955
Transcript ID Bladder Colon Liver Lung Ovary
ENST00000620955 4.278±0.00 7.124±0.00 4.485±0.00 7.696±0.00 4.774±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005654 TAS nucleoplasm
GO:0005849 NAS mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006379 NAS mRNA cleavage
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119954 Pcf11-001 protein_coding Mus_musculus 0 3542
ENSMUST00000151177 Pcf11-002 protein_coding Mus_musculus 0 1797

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