C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PBX/knotted 1 homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165495 PKNOX2 9606 + 11:125164687-125433389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298282 PKNOX2-001 125164706-125433389 protein_coding
  ENST00000526955 PKNOX2-006 125385688-125433389 retained_intron
  ENST00000527238 PKNOX2-007 125164735-125367875 protein_coding
  ENST00000530517 PKNOX2-002 125164687-125431501 processed_transcript
  ENST00000531116 PKNOX2-004 125164695-125431544 processed_transcript
  ENST00000531212 PKNOX2-008 125184187-125367880 protein_coding
  ENST00000532623 PKNOX2-003 125164754-125431544 nonsense_mediated_decay
  ENST00000557814 PKNOX2-015 125164728-125398063 processed_transcript
  ENST00000558705 PKNOX2-012 125330259-125385618 protein_coding
  ENST00000558729 PKNOX2-009 125240063-125397915 processed_transcript
  ENST00000559662 PKNOX2-014 125164726-125397983 processed_transcript
  ENST00000561115 PKNOX2-010 125240073-125367882 processed_transcript
  ENST00000561298 PKNOX2-013 125331613-125385688 retained_intron
  ENST00000561399 PKNOX2-011 125164752-125288150 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000298282ENST00000526955ENST00000527238ENST00000530517ENST00000532623ENST00000558705ENST00000558729
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000298282 0.640±0.00 0.506±0.00 0.107±0.00 6.024±0.00 0.559±0.49 N/A 0.599±0.00 0.042±0.00 N/A 5.770±0.00 4.441±5.12 3.997±1.83 1.486±0.00
ENST00000526955 N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A 0.168±0.00 N/A 0.250±0.00 N/A N/A
ENST00000527238 N/A N/A 2.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530517 0.328±0.00 N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A
ENST00000532623 N/A N/A N/A N/A N/A 0.211±0.00 N/A N/A N/A N/A 1.066±0.00 0.826±0.00 N/A
ENST00000558705 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.698±0.00 N/A N/A N/A
ENST00000558729 N/A N/A N/A N/A N/A 0.633±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080D CIL_00080D_0001 VISTA 11:124962373-125564535

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0003785 IEA actin monomer binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0015629 IEA actin cytoskeleton
GO:0015630 IEA microtubule cytoskeleton
GO:0043565 IEA sequence-specific DNA binding
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055349 pknox2 pbx/knotted 1 homeobox 2 protein_coding Danio_rerio
ENSMUSG00000035934 Pknox2 Pbx/knotted 1 homeobox 2 protein_coding Mus_musculus

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