C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PBX/knotted 1 homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298282 PKNOX2-001 ENSG00000165495 9606 + 11:125164706-125433389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENST00000298282
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENST00000298282 0.640±0.00 0.506±0.00 0.107±0.00 6.024±0.00 0.559±0.49 0.599±0.00 0.042±0.00 5.770±0.00 4.441±5.12 3.997±1.83 1.486±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080D CIL_00080D_0001 VISTA 11:124962373-125564535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0003785 IEA actin monomer binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0015629 IEA actin cytoskeleton
GO:0015630 IEA microtubule cytoskeleton
GO:0043565 IEA sequence-specific DNA binding
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039674 Pknox2-001 protein_coding Mus_musculus 0 2808
ENSMUST00000080754 Pknox2-201 protein_coding Mus_musculus 0 2651
ENSMUST00000177218 Pknox2-002 protein_coding Mus_musculus 0 2651
ENSMUST00000177080 Pknox2-006 processed_transcript Mus_musculus 0 2226
ENSMUST00000175938 Pknox2-005 nonsense_mediated_decay Mus_musculus 0 2084
ENSMUST00000176562 Pknox2-004 retained_intron Mus_musculus 0 1050
ENSMUST00000176622 Pknox2-003 retained_intron Mus_musculus 0 754
ENSMUST00000188348 Pknox2-010 protein_coding Mus_musculus 0 553
ENSMUST00000188057 Pknox2-008 protein_coding Mus_musculus 0 446
ENSMUST00000189294 Pknox2-011 protein_coding Mus_musculus 0 340
ENSMUST00000177444 Pknox2-007 protein_coding Mus_musculus 0 320

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