C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Pbx/knotted 1 homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035934 Pknox2 10090 - 9:36890982-37147322 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039674 Pknox2-001 36890982-37147289 protein_coding
  ENSMUST00000080754 Pknox2-201 36890985-37147314 protein_coding
  ENSMUST00000175938 Pknox2-005 36892478-36968490 nonsense_mediated_decay
  ENSMUST00000176562 Pknox2-004 36922343-37083279 retained_intron
  ENSMUST00000176622 Pknox2-003 36934654-37083279 retained_intron
  ENSMUST00000177080 Pknox2-006 36892642-37083279 processed_transcript
  ENSMUST00000177218 Pknox2-002 36890982-37083309 protein_coding
  ENSMUST00000177444 Pknox2-007 36936426-37083279 protein_coding
  ENSMUST00000188057 Pknox2-008 36936455-37147322 protein_coding
  ENSMUST00000188348 Pknox2-010 36936439-37137567 protein_coding
  ENSMUST00000188433 Pknox2-009 36987178-37147266 processed_transcript
  ENSMUST00000189294 Pknox2-011 36954772-37145660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039674ENSMUST00000080754ENSMUST00000175938ENSMUST00000176562ENSMUST00000176622ENSMUST00000177080ENSMUST00000177218ENSMUST00000188057ENSMUST00000188348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039674 4.800±4.14 0.323±0.15 3.619±0.09 8.435±3.78 1.658±1.54 0.882±0.29 2.311±0.33 1.587±0.44 0.105±0.04 7.208±3.01 8.584±1.19 9.349±3.48 0.696±0.29 15.022±9.00
ENSMUST00000080754 0.716±0.00 N/A 1.820±0.08 1.810±0.44 1.200±0.00 N/A 0.994±0.03 N/A 0.091±0.00 N/A 1.459±0.00 1.436±0.00 0.479±0.17 N/A
ENSMUST00000175938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.083±0.00
ENSMUST00000176562 N/A 0.479±0.00 N/A N/A N/A 0.515±0.00 N/A N/A 0.044±0.01 N/A N/A N/A N/A N/A
ENSMUST00000176622 N/A 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177080 N/A 0.252±0.00 N/A 2.869±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177218 2.418±1.80 0.503±0.20 N/A N/A 0.749±0.36 0.800±0.44 0.915±0.03 0.760±0.24 0.080±0.02 2.940±1.04 N/A 4.095±1.86 0.169±0.00 N/A
ENSMUST00000188057 N/A 1.290±0.33 N/A N/A 2.574±0.57 2.424±0.00 N/A N/A 0.470±0.00 N/A N/A 31.663±2.79 N/A N/A
ENSMUST00000188348 N/A N/A N/A N/A 0.858±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080D CIL_00080D_0002 VISTA 9:36753339-37355278
CIL_0003CK CIL_0003CK_0002 CGP 9:36890982-37223210

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISA DNA binding
GO:0003785 IDA actin monomer binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0015629 IDA actin cytoskeleton
GO:0015630 IDA microtubule cytoskeleton
GO:0043565 IDA sequence-specific DNA binding
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055349 pknox2 pbx/knotted 1 homeobox 2 protein_coding Danio_rerio
ENSG00000165495 PKNOX2 PBX/knotted 1 homeobox 2 protein_coding Homo_sapiens

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