C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synovial sarcoma, X breakpoint 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165584 SSX3 9606 - X:48346428-48356707 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298396 SSX3-001 48346428-48356666 protein_coding
  ENST00000376893 SSX3-002 48348257-48356707 protein_coding
  ENST00000376895 SSX3-003 48346626-48352247 retained_intron
  ENST00000612497 SSX3-004 48349446-48355272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartTestisENST00000298396ENST00000376893ENST00000376895
Transcript ID Heart Testis
ENST00000298396 N/A 4.178±0.28
ENST00000376893 0.053±0.00 N/A
ENST00000376895 N/A 3.675±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Y9 CIL_0000Y9_0001 CGP X:48255317-48356707
CIL_0000Y9 CIL_0000Y9_0003 CGP X:48346428-48393347

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000023165 Ssxb2 synovial sarcoma, X member B, breakpoint 2 protein_coding Mus_musculus
ENSMUSG00000035371 Ssx9 synovial sarcoma, X breakpoint 9 protein_coding Mus_musculus
ENSMUSG00000062814 Ssxa1 synovial sarcoma, X member A, breakpoint 1 protein_coding Mus_musculus
ENSMUSG00000068218 Ssxb9 synovial sarcoma, X member B, breakpoint 9 protein_coding Mus_musculus
ENSMUSG00000068219 Ssxb10 synovial sarcoma, X member B, breakpoint 10 protein_coding Mus_musculus
ENSMUSG00000071816 Ssxb5 synovial sarcoma, X member B, breakpoint 5 protein_coding Mus_musculus
ENSMUSG00000079697 Gm5751 predicted gene 5751 protein_coding Mus_musculus
ENSMUSG00000079699 Gm6592 predicted gene 6592 protein_coding Mus_musculus
ENSMUSG00000079701 Ssxb3 synovial sarcoma, X member B, breakpoint 3 protein_coding Mus_musculus
ENSMUSG00000079702 Ssxb6 synovial sarcoma, X member B, breakpoint 6 protein_coding Mus_musculus
ENSMUSG00000079703 Ssxb8 synovial sarcoma, X member B, breakpoint 8 protein_coding Mus_musculus
ENSMUSG00000079704 Gm14459 predicted gene 14459 protein_coding Mus_musculus
ENSMUSG00000079705 Ssxb1 synovial sarcoma, X member B, breakpoint 1 protein_coding Mus_musculus
ENSMUSG00000095316 Gm21876 predicted gene, 21876 protein_coding Mus_musculus

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