| Source ID |
Type |
Tax ID |
Position |
| ENSG00000241476-ENSG00000268447 |
CGP |
9606 |
X:52644567-52790305  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0000Y9_0005 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000126752' => 'synovial sarcoma, X breakpoint 1',
'ENSG00000165583' => 'synovial sarcoma, X breakpoint 5',
'ENSG00000165584' => 'synovial sarcoma, X breakpoint 3',
'ENSG00000204648' => 'synovial sarcoma, X breakpoint 9',
'ENSG00000227302' => 'SSX family pseudogene 9',
'ENSG00000230100' => null,
'ENSG00000232813' => null,
'ENSG00000234391' => null,
'ENSG00000237345' => null,
'ENSG00000241207' => null,
'ENSG00000270747' => null,
'ENSG00000204368' => null,
'ENSG00000229662' => null,
'ENSG00000231568' => null,
'ENSG00000234780' => null,
'ENSG00000252856' => 'RNA, 5S ribosomal pseudogene 503',
'ENSG00000225055' => null,
'ENSG00000234448' => null,
'ENSG00000268009' => 'synovial sarcoma, X breakpoint 4',
'ENSG00000187754' => 'synovial sarcoma, X breakpoint 7',
'ENSG00000222608' => 'RNA, 5S ribosomal pseudogene 504',
'ENSG00000225508' => 'SSX family pseudogene 5',
'ENSG00000228354' => null,
'ENSG00000237275' => null,
'ENSG00000241476' => 'synovial sarcoma, X breakpoint 2',
'ENSG00000223958' => null,
'ENSG00000225397' => null,
'ENSG00000226867' => null,
'ENSG00000229826' => null,
'ENSG00000268447' => 'synovial sarcoma, X breakpoint 2B',
'ENSG00000269281' => null,
'ENSG00000269791' => 'synovial sarcoma, X breakpoint 4B',
'ENSMUSG00000023165' => 'synovial sarcoma, X member B, breakpoint 2',
'ENSMUSG00000079704' => 'predicted gene 14459',
'ENSMUSG00000035371' => 'synovial sarcoma, X breakpoint 9',
'ENSMUSG00000071816' => 'synovial sarcoma, X member B, breakpoint 5',
'ENSMUSG00000062814' => 'synovial sarcoma, X member A, breakpoint 1',
'ENSMUSG00000083892' => 'predicted gene 1848',
'ENSMUSG00000095316' => 'predicted gene, 21876',
'ENSMUSG00000068218' => 'synovial sarcoma, X member B, breakpoint 9',
'ENSMUSG00000079705' => 'synovial sarcoma, X member B, breakpoint 1',
'ENSMUSG00000068219' => 'synovial sarcoma, X member B, breakpoint 10',
'ENSMUSG00000079699' => 'predicted gene 6592',
'ENSMUSG00000082129' => 'predicted gene 14502',
'ENSMUSG00000079697' => 'predicted gene 5751',
'ENSMUSG00000079701' => 'synovial sarcoma, X member B, breakpoint 3',
'ENSMUSG00000079703' => 'synovial sarcoma, X member B, breakpoint 8',
'ENSMUSG00000080897' => 'predicted gene 14500',
'ENSMUSG00000081410' => 'predicted pseudogene 6797',
'ENSMUSG00000082458' => 'predicted gene 9430',
'ENSMUSG00000082496' => 'predicted gene 6798',
'ENSMUSG00000079702' => 'synovial sarcoma, X member B, breakpoint 6'
),
'gene_name_arr' => array(
'ENSG00000126752' => 'SSX1',
'ENSG00000165583' => 'SSX5',
'ENSG00000165584' => 'SSX3',
'ENSG00000204648' => 'SSX9',
'ENSG00000227302' => 'SSXP9',
'ENSG00000230100' => 'RP11-344N17.8',
'ENSG00000232813' => 'RP11-344N17.2',
'ENSG00000234391' => 'RP11-344N17.6',
'ENSG00000237345' => 'RP11-344N17.11',
'ENSG00000241207' => 'RP11-344N17.3',
'ENSG00000270747' => 'RP11-344N17.15',
'ENSG00000204368' => 'RP11-552E4.3',
'ENSG00000229662' => 'RP11-552E4.5',
'ENSG00000231568' => 'RP11-552E4.4',
'ENSG00000234780' => 'RP11-552E4.2',
'ENSG00000252856' => 'RNA5SP503',
'ENSG00000225055' => 'RP11-344N17.9',
'ENSG00000234448' => 'RP11-344N17.13',
'ENSG00000268009' => 'SSX4',
'ENSG00000187754' => 'SSX7',
'ENSG00000222608' => 'RNA5SP504',
'ENSG00000225508' => 'SSXP5',
'ENSG00000228354' => 'RP11-552J9.9',
'ENSG00000237275' => 'RP11-552J9.11',
'ENSG00000241476' => 'SSX2',
'ENSG00000223958' => 'RP11-552J9.12',
'ENSG00000225397' => 'RP11-552J9.13',
'ENSG00000226867' => 'RP13-77O11.8',
'ENSG00000229826' => 'RP11-552J9.14',
'ENSG00000268447' => 'SSX2B',
'ENSG00000269281' => 'RP11-564H18.1',
'ENSG00000269791' => 'SSX4B',
'ENSMUSG00000023165' => 'Ssxb2',
'ENSMUSG00000079704' => 'Gm14459',
'ENSMUSG00000035371' => 'Ssx9',
'ENSMUSG00000071816' => 'Ssxb5',
'ENSMUSG00000062814' => 'Ssxa1',
'ENSMUSG00000083892' => 'Gm1848',
'ENSMUSG00000095316' => 'Gm21876',
'ENSMUSG00000068218' => 'Ssxb9',
'ENSMUSG00000079705' => 'Ssxb1',
'ENSMUSG00000068219' => 'Ssxb10',
'ENSMUSG00000079699' => 'Gm6592',
'ENSMUSG00000082129' => 'Gm14502',
'ENSMUSG00000079697' => 'Gm5751',
'ENSMUSG00000079701' => 'Ssxb3',
'ENSMUSG00000079703' => 'Ssxb8',
'ENSMUSG00000080897' => 'Gm14500',
'ENSMUSG00000081410' => 'Gm6797',
'ENSMUSG00000082458' => 'Gm9430',
'ENSMUSG00000082496' => 'Gm6798',
'ENSMUSG00000079702' => 'Ssxb6'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 29 => 'Kidney',
(int) 34 => 'Liver',
(int) 43 => 'Lung',
(int) 46 => 'Muscle',
(int) 48 => 'Ovary',
(int) 57 => 'Placenta',
(int) 68 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 108,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000376919' => array(
'start' => '48255317',
'end' => '48267444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX1-001'
),
'ENST00000311798' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-001'
),
'ENST00000347757' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-201'
),
'ENST00000376923' => array(
'start' => '48186220',
'end' => '48195358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-002'
),
'ENST00000403001' => array(
'start' => '48186775',
'end' => '48192381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-003'
),
'ENST00000613884' => array(
'start' => '48186753',
'end' => '48277578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-202'
),
'ENST00000298396' => array(
'start' => '48346428',
'end' => '48356666',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-001'
),
'ENST00000376893' => array(
'start' => '48348257',
'end' => '48356707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-002'
),
'ENST00000376895' => array(
'start' => '48346626',
'end' => '48352247',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX3-003'
),
'ENST00000612497' => array(
'start' => '48349446',
'end' => '48355272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-004'
),
'ENST00000376909' => array(
'start' => '48296816',
'end' => '48304867',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'SSX9-001'
),
'ENST00000608568' => array(
'start' => '48301550',
'end' => '48306179',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX9-002'
),
'ENST00000417503' => array(
'start' => '48322349',
'end' => '48326683',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP9-001'
),
'ENST00000422410' => array(
'start' => '48333675',
'end' => '48334439',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-344N17.8-001'
),
'ENST00000433189' => array(
'start' => '48274904',
'end' => '48275047',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.2-001'
),
'ENST00000453735' => array(
'start' => '48306769',
'end' => '48309055',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.6-001'
),
'ENST00000445444' => array(
'start' => '48279423',
'end' => '48281792',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.11-001'
),
'ENST00000456455' => array(
'start' => '48276704',
'end' => '48277578',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP11-344N17.3-001'
),
'ENST00000603331' => array(
'start' => '48336899',
'end' => '48337169',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.15-001'
),
'ENST00000433276' => array(
'start' => '48212791',
'end' => '48218010',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.3-001'
),
'ENST00000441060' => array(
'start' => '48244894',
'end' => '48245745',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.5-001'
),
'ENST00000429428' => array(
'start' => '48228833',
'end' => '48228959',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.4-001'
),
'ENST00000437312' => array(
'start' => '48197221',
'end' => '48199431',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.2-001'
),
'ENST00000517047' => array(
'start' => '48206258',
'end' => '48206374',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP503-201'
),
'ENST00000452266' => array(
'start' => '48357125',
'end' => '48359495',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.9-001'
),
'ENST00000433136' => array(
'start' => '48371905',
'end' => '48372095',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.13-001'
),
'ENST00000595689' => array(
'start' => '48383527',
'end' => '48393347',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-001'
),
'ENST00000620320' => array(
'start' => '48383516',
'end' => '48393343',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-201'
),
'ENST00000298181' => array(
'start' => '52644090',
'end' => '52654900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX7-001'
),
'ENST00000410676' => array(
'start' => '52665231',
'end' => '52665347',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP504-201'
),
'ENST00000443473' => array(
'start' => '52672718',
'end' => '52677051',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP5-001'
),
'ENST00000450868' => array(
'start' => '52655207',
'end' => '52657254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.9-001'
),
'ENST00000440592' => array(
'start' => '52687363',
'end' => '52687633',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.11-001'
),
'ENST00000336777' => array(
'start' => '52696896',
'end' => '52707161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-001'
),
'ENST00000337502' => array(
'start' => '52696896',
'end' => '52707189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-002'
),
'ENST00000476392' => array(
'start' => '52697231',
'end' => '52702728',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SSX2-003'
),
'ENST00000610779' => array(
'start' => '52644567',
'end' => '52705838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-201'
),
'ENST00000435089' => array(
'start' => '52707602',
'end' => '52709933',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.12-001'
),
'ENST00000454598' => array(
'start' => '52722338',
'end' => '52722524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.13-001'
),
'ENST00000434905' => array(
'start' => '52781452',
'end' => '52785786',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-77O11.8-001'
),
'ENST00000443639' => array(
'start' => '52735901',
'end' => '52736107',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.14-001'
),
'ENST00000288839' => array(
'start' => '52755702',
'end' => '52761325',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX2B-003'
),
'ENST00000596480' => array(
'start' => '52751241',
'end' => '52761535',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-002'
),
'ENST00000612490' => array(
'start' => '52751269',
'end' => '52761536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-001'
),
'ENST00000616191' => array(
'start' => '52751132',
'end' => '52790305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-201'
),
'ENST00000599675' => array(
'start' => '52770809',
'end' => '52771080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-564H18.1-001'
),
'ENST00000595235' => array(
'start' => '48402078',
'end' => '48411899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-001'
),
'ENST00000619890' => array(
'start' => '48402082',
'end' => '48411910',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-201'
),
'ENSMUST00000023931' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-001'
),
'ENSMUST00000103000' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-002'
),
'ENSMUST00000115573' => array(
'start' => '8514052',
'end' => '8524954',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm14459-001'
),
'ENSMUST00000103001' => array(
'start' => '8748432',
'end' => '8754587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssx9-001'
),
'ENSMUST00000089370' => array(
'start' => '8803691',
'end' => '8809386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb5-001'
),
'ENSMUST00000072593' => array(
'start' => '21115820',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-201'
),
'ENSMUST00000133987' => array(
'start' => '21118372',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-001'
),
'ENSMUST00000120711' => array(
'start' => '21146844',
'end' => '21147640',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm1848-001'
),
'ENSMUST00000096511' => array(
'start' => '21174439',
'end' => '21175653',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21876-201'
),
'ENSMUST00000115584' => array(
'start' => '8366978',
'end' => '8375390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb9-001'
),
'ENSMUST00000037297' => array(
'start' => '8413305',
'end' => '8422157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb1-001'
),
'ENSMUST00000103003' => array(
'start' => '8327424',
'end' => '8336237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb10-001'
),
'ENSMUST00000115563' => array(
'start' => '8843994',
'end' => '8849607',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm6592-001'
),
'ENSMUST00000118154' => array(
'start' => '8830322',
'end' => '8830434',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14502-001'
),
'ENSMUST00000115561' => array(
'start' => '8874253',
'end' => '8880750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5751-001'
),
'ENSMUST00000089374' => array(
'start' => '8583404',
'end' => '8591816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-001'
),
'ENSMUST00000089379' => array(
'start' => '8583544',
'end' => '8589246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-201'
),
'ENSMUST00000101690' => array(
'start' => '8685331',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-201'
),
'ENSMUST00000185125' => array(
'start' => '8684887',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-001'
),
'ENSMUST00000121647' => array(
'start' => '8604420',
'end' => '8604532',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14500-001'
),
'ENSMUST00000119440' => array(
'start' => '8639622',
'end' => '8645273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm6797-001'
),
'ENSMUST00000121232' => array(
'start' => '8662302',
'end' => '8663828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9430-001'
),
'ENSMUST00000119961' => array(
'start' => '8654465',
'end' => '8654824',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6798-001'
),
'ENSMUST00000138642' => array(
'start' => '8542705',
'end' => '8548255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb6-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000165584' => array(
[maximum depth reached]
),
'ENSG00000204648' => array(
[maximum depth reached]
),
'ENSG00000227302' => array(
[maximum depth reached]
),
'ENSG00000230100' => array(
[maximum depth reached]
),
'ENSG00000237345' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
),
'ENSG00000270747' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Testis',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Testis',
(int) 21 => 'Liver',
(int) 22 => 'Brain',
(int) 23 => 'Adipose'
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000204368' => array(
[maximum depth reached]
),
'ENSG00000229662' => array(
[maximum depth reached]
),
'ENSG00000234780' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Brain'
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
'ENSG00000165584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Placenta',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000071816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis'
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000062814' => array(
[maximum depth reached]
),
'ENSMUSG00000083892' => array(
[maximum depth reached]
),
'ENSMUSG00000095316' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Testis'
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000068219' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis'
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000071816' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Liver'
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000079697' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta',
(int) 2 => 'Testis',
(int) 3 => 'Liver'
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
),
'ENSMUSG00000081410' => array(
[maximum depth reached]
),
'ENSMUSG00000082458' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Adipose',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Ovary'
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000079702' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000126752' => 'synovial sarcoma, X breakpoint 1',
'ENSG00000165583' => 'synovial sarcoma, X breakpoint 5',
'ENSG00000165584' => 'synovial sarcoma, X breakpoint 3',
'ENSG00000204648' => 'synovial sarcoma, X breakpoint 9',
'ENSG00000227302' => 'SSX family pseudogene 9',
'ENSG00000230100' => null,
'ENSG00000232813' => null,
'ENSG00000234391' => null,
'ENSG00000237345' => null,
'ENSG00000241207' => null,
'ENSG00000270747' => null,
'ENSG00000204368' => null,
'ENSG00000229662' => null,
'ENSG00000231568' => null,
'ENSG00000234780' => null,
'ENSG00000252856' => 'RNA, 5S ribosomal pseudogene 503',
'ENSG00000225055' => null,
'ENSG00000234448' => null,
'ENSG00000268009' => 'synovial sarcoma, X breakpoint 4',
'ENSG00000187754' => 'synovial sarcoma, X breakpoint 7',
'ENSG00000222608' => 'RNA, 5S ribosomal pseudogene 504',
'ENSG00000225508' => 'SSX family pseudogene 5',
'ENSG00000228354' => null,
'ENSG00000237275' => null,
'ENSG00000241476' => 'synovial sarcoma, X breakpoint 2',
'ENSG00000223958' => null,
'ENSG00000225397' => null,
'ENSG00000226867' => null,
'ENSG00000229826' => null,
'ENSG00000268447' => 'synovial sarcoma, X breakpoint 2B',
'ENSG00000269281' => null,
'ENSG00000269791' => 'synovial sarcoma, X breakpoint 4B',
'ENSMUSG00000023165' => 'synovial sarcoma, X member B, breakpoint 2',
'ENSMUSG00000079704' => 'predicted gene 14459',
'ENSMUSG00000035371' => 'synovial sarcoma, X breakpoint 9',
'ENSMUSG00000071816' => 'synovial sarcoma, X member B, breakpoint 5',
'ENSMUSG00000062814' => 'synovial sarcoma, X member A, breakpoint 1',
'ENSMUSG00000083892' => 'predicted gene 1848',
'ENSMUSG00000095316' => 'predicted gene, 21876',
'ENSMUSG00000068218' => 'synovial sarcoma, X member B, breakpoint 9',
'ENSMUSG00000079705' => 'synovial sarcoma, X member B, breakpoint 1',
'ENSMUSG00000068219' => 'synovial sarcoma, X member B, breakpoint 10',
'ENSMUSG00000079699' => 'predicted gene 6592',
'ENSMUSG00000082129' => 'predicted gene 14502',
'ENSMUSG00000079697' => 'predicted gene 5751',
'ENSMUSG00000079701' => 'synovial sarcoma, X member B, breakpoint 3',
'ENSMUSG00000079703' => 'synovial sarcoma, X member B, breakpoint 8',
'ENSMUSG00000080897' => 'predicted gene 14500',
'ENSMUSG00000081410' => 'predicted pseudogene 6797',
'ENSMUSG00000082458' => 'predicted gene 9430',
'ENSMUSG00000082496' => 'predicted gene 6798',
'ENSMUSG00000079702' => 'synovial sarcoma, X member B, breakpoint 6'
)
$gene_name_arr = array(
'ENSG00000126752' => 'SSX1',
'ENSG00000165583' => 'SSX5',
'ENSG00000165584' => 'SSX3',
'ENSG00000204648' => 'SSX9',
'ENSG00000227302' => 'SSXP9',
'ENSG00000230100' => 'RP11-344N17.8',
'ENSG00000232813' => 'RP11-344N17.2',
'ENSG00000234391' => 'RP11-344N17.6',
'ENSG00000237345' => 'RP11-344N17.11',
'ENSG00000241207' => 'RP11-344N17.3',
'ENSG00000270747' => 'RP11-344N17.15',
'ENSG00000204368' => 'RP11-552E4.3',
'ENSG00000229662' => 'RP11-552E4.5',
'ENSG00000231568' => 'RP11-552E4.4',
'ENSG00000234780' => 'RP11-552E4.2',
'ENSG00000252856' => 'RNA5SP503',
'ENSG00000225055' => 'RP11-344N17.9',
'ENSG00000234448' => 'RP11-344N17.13',
'ENSG00000268009' => 'SSX4',
'ENSG00000187754' => 'SSX7',
'ENSG00000222608' => 'RNA5SP504',
'ENSG00000225508' => 'SSXP5',
'ENSG00000228354' => 'RP11-552J9.9',
'ENSG00000237275' => 'RP11-552J9.11',
'ENSG00000241476' => 'SSX2',
'ENSG00000223958' => 'RP11-552J9.12',
'ENSG00000225397' => 'RP11-552J9.13',
'ENSG00000226867' => 'RP13-77O11.8',
'ENSG00000229826' => 'RP11-552J9.14',
'ENSG00000268447' => 'SSX2B',
'ENSG00000269281' => 'RP11-564H18.1',
'ENSG00000269791' => 'SSX4B',
'ENSMUSG00000023165' => 'Ssxb2',
'ENSMUSG00000079704' => 'Gm14459',
'ENSMUSG00000035371' => 'Ssx9',
'ENSMUSG00000071816' => 'Ssxb5',
'ENSMUSG00000062814' => 'Ssxa1',
'ENSMUSG00000083892' => 'Gm1848',
'ENSMUSG00000095316' => 'Gm21876',
'ENSMUSG00000068218' => 'Ssxb9',
'ENSMUSG00000079705' => 'Ssxb1',
'ENSMUSG00000068219' => 'Ssxb10',
'ENSMUSG00000079699' => 'Gm6592',
'ENSMUSG00000082129' => 'Gm14502',
'ENSMUSG00000079697' => 'Gm5751',
'ENSMUSG00000079701' => 'Ssxb3',
'ENSMUSG00000079703' => 'Ssxb8',
'ENSMUSG00000080897' => 'Gm14500',
'ENSMUSG00000081410' => 'Gm6797',
'ENSMUSG00000082458' => 'Gm9430',
'ENSMUSG00000082496' => 'Gm6798',
'ENSMUSG00000079702' => 'Ssxb6'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48255317',
'seq_end' => '48356707',
'region_length' => '101390',
'region_type' => 'CGP',
'el_id' => 'ENSG00000126752-ENSG00000165584'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0002',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48186220',
'seq_end' => '48277578',
'region_length' => '91358',
'region_type' => 'CGP',
'el_id' => 'ENSG00000165583-ENSG00000165583'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0003',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48346428',
'seq_end' => '48393347',
'region_length' => '46919',
'region_type' => 'CGP',
'el_id' => 'ENSG00000165584-ENSG00000268009'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0004',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '52644090',
'seq_end' => '52707189',
'region_length' => '63099',
'region_type' => 'CGP',
'el_id' => 'ENSG00000187754-ENSG00000241476'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0005',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '52644567',
'seq_end' => '52790305',
'region_length' => '145738',
'region_type' => 'CGP',
'el_id' => 'ENSG00000241476-ENSG00000268447'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0006',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48383516',
'seq_end' => '48411910',
'region_length' => '28394',
'region_type' => 'CGP',
'el_id' => 'ENSG00000268009-ENSG00000269791'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0007',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8454345',
'seq_end' => '8524954',
'region_length' => '70609',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000023165-ENSMUSG00000079704'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0008',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8748432',
'seq_end' => '8809386',
'region_length' => '60954',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000035371-ENSMUSG00000071816'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0009',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '21115820',
'seq_end' => '21175653',
'region_length' => '59833',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062814-ENSMUSG00000095316'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000A',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8366978',
'seq_end' => '8422157',
'region_length' => '55179',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000068218-ENSMUSG00000079705'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000B',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8327424',
'seq_end' => '8375390',
'region_length' => '47966',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000068219-ENSMUSG00000068218'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000C',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8803691',
'seq_end' => '8849607',
'region_length' => '45916',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000071816-ENSMUSG00000079699'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000D',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8843994',
'seq_end' => '8880750',
'region_length' => '36756',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079699-ENSMUSG00000079697'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000E',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8583404',
'seq_end' => '8690844',
'region_length' => '107440',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079701-ENSMUSG00000079703'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000F',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8542705',
'seq_end' => '8591816',
'region_length' => '49111',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079702-ENSMUSG00000079701'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000G',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8684887',
'seq_end' => '8754587',
'region_length' => '69700',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079703-ENSMUSG00000035371'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000H',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8514052',
'seq_end' => '8548255',
'region_length' => '34203',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079704-ENSMUSG00000079702'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000I',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8413305',
'seq_end' => '8461726',
'region_length' => '48421',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079705-ENSMUSG00000023165'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 29 => 'Kidney',
(int) 34 => 'Liver',
(int) 43 => 'Lung',
(int) 46 => 'Muscle',
(int) 48 => 'Ovary',
(int) 57 => 'Placenta',
(int) 68 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 108
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000376919' => array(
'start' => '48255317',
'end' => '48267444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX1-001'
),
'ENST00000311798' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-001'
),
'ENST00000347757' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-201'
),
'ENST00000376923' => array(
'start' => '48186220',
'end' => '48195358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-002'
),
'ENST00000403001' => array(
'start' => '48186775',
'end' => '48192381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-003'
),
'ENST00000613884' => array(
'start' => '48186753',
'end' => '48277578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-202'
),
'ENST00000298396' => array(
'start' => '48346428',
'end' => '48356666',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-001'
),
'ENST00000376893' => array(
'start' => '48348257',
'end' => '48356707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-002'
),
'ENST00000376895' => array(
'start' => '48346626',
'end' => '48352247',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX3-003'
),
'ENST00000612497' => array(
'start' => '48349446',
'end' => '48355272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-004'
),
'ENST00000376909' => array(
'start' => '48296816',
'end' => '48304867',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'SSX9-001'
),
'ENST00000608568' => array(
'start' => '48301550',
'end' => '48306179',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX9-002'
),
'ENST00000417503' => array(
'start' => '48322349',
'end' => '48326683',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP9-001'
),
'ENST00000422410' => array(
'start' => '48333675',
'end' => '48334439',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-344N17.8-001'
),
'ENST00000433189' => array(
'start' => '48274904',
'end' => '48275047',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.2-001'
),
'ENST00000453735' => array(
'start' => '48306769',
'end' => '48309055',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.6-001'
),
'ENST00000445444' => array(
'start' => '48279423',
'end' => '48281792',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.11-001'
),
'ENST00000456455' => array(
'start' => '48276704',
'end' => '48277578',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP11-344N17.3-001'
),
'ENST00000603331' => array(
'start' => '48336899',
'end' => '48337169',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.15-001'
),
'ENST00000433276' => array(
'start' => '48212791',
'end' => '48218010',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.3-001'
),
'ENST00000441060' => array(
'start' => '48244894',
'end' => '48245745',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.5-001'
),
'ENST00000429428' => array(
'start' => '48228833',
'end' => '48228959',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.4-001'
),
'ENST00000437312' => array(
'start' => '48197221',
'end' => '48199431',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.2-001'
),
'ENST00000517047' => array(
'start' => '48206258',
'end' => '48206374',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP503-201'
),
'ENST00000452266' => array(
'start' => '48357125',
'end' => '48359495',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.9-001'
),
'ENST00000433136' => array(
'start' => '48371905',
'end' => '48372095',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.13-001'
),
'ENST00000595689' => array(
'start' => '48383527',
'end' => '48393347',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-001'
),
'ENST00000620320' => array(
'start' => '48383516',
'end' => '48393343',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-201'
),
'ENST00000298181' => array(
'start' => '52644090',
'end' => '52654900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX7-001'
),
'ENST00000410676' => array(
'start' => '52665231',
'end' => '52665347',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP504-201'
),
'ENST00000443473' => array(
'start' => '52672718',
'end' => '52677051',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP5-001'
),
'ENST00000450868' => array(
'start' => '52655207',
'end' => '52657254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.9-001'
),
'ENST00000440592' => array(
'start' => '52687363',
'end' => '52687633',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.11-001'
),
'ENST00000336777' => array(
'start' => '52696896',
'end' => '52707161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-001'
),
'ENST00000337502' => array(
'start' => '52696896',
'end' => '52707189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-002'
),
'ENST00000476392' => array(
'start' => '52697231',
'end' => '52702728',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SSX2-003'
),
'ENST00000610779' => array(
'start' => '52644567',
'end' => '52705838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-201'
),
'ENST00000435089' => array(
'start' => '52707602',
'end' => '52709933',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.12-001'
),
'ENST00000454598' => array(
'start' => '52722338',
'end' => '52722524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.13-001'
),
'ENST00000434905' => array(
'start' => '52781452',
'end' => '52785786',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-77O11.8-001'
),
'ENST00000443639' => array(
'start' => '52735901',
'end' => '52736107',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.14-001'
),
'ENST00000288839' => array(
'start' => '52755702',
'end' => '52761325',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX2B-003'
),
'ENST00000596480' => array(
'start' => '52751241',
'end' => '52761535',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-002'
),
'ENST00000612490' => array(
'start' => '52751269',
'end' => '52761536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-001'
),
'ENST00000616191' => array(
'start' => '52751132',
'end' => '52790305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-201'
),
'ENST00000599675' => array(
'start' => '52770809',
'end' => '52771080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-564H18.1-001'
),
'ENST00000595235' => array(
'start' => '48402078',
'end' => '48411899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-001'
),
'ENST00000619890' => array(
'start' => '48402082',
'end' => '48411910',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-201'
),
'ENSMUST00000023931' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-001'
),
'ENSMUST00000103000' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-002'
),
'ENSMUST00000115573' => array(
'start' => '8514052',
'end' => '8524954',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm14459-001'
),
'ENSMUST00000103001' => array(
'start' => '8748432',
'end' => '8754587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssx9-001'
),
'ENSMUST00000089370' => array(
'start' => '8803691',
'end' => '8809386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb5-001'
),
'ENSMUST00000072593' => array(
'start' => '21115820',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-201'
),
'ENSMUST00000133987' => array(
'start' => '21118372',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-001'
),
'ENSMUST00000120711' => array(
'start' => '21146844',
'end' => '21147640',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm1848-001'
),
'ENSMUST00000096511' => array(
'start' => '21174439',
'end' => '21175653',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21876-201'
),
'ENSMUST00000115584' => array(
'start' => '8366978',
'end' => '8375390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb9-001'
),
'ENSMUST00000037297' => array(
'start' => '8413305',
'end' => '8422157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb1-001'
),
'ENSMUST00000103003' => array(
'start' => '8327424',
'end' => '8336237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb10-001'
),
'ENSMUST00000115563' => array(
'start' => '8843994',
'end' => '8849607',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm6592-001'
),
'ENSMUST00000118154' => array(
'start' => '8830322',
'end' => '8830434',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14502-001'
),
'ENSMUST00000115561' => array(
'start' => '8874253',
'end' => '8880750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5751-001'
),
'ENSMUST00000089374' => array(
'start' => '8583404',
'end' => '8591816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-001'
),
'ENSMUST00000089379' => array(
'start' => '8583544',
'end' => '8589246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-201'
),
'ENSMUST00000101690' => array(
'start' => '8685331',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-201'
),
'ENSMUST00000185125' => array(
'start' => '8684887',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-001'
),
'ENSMUST00000121647' => array(
'start' => '8604420',
'end' => '8604532',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14500-001'
),
'ENSMUST00000119440' => array(
'start' => '8639622',
'end' => '8645273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm6797-001'
),
'ENSMUST00000121232' => array(
'start' => '8662302',
'end' => '8663828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9430-001'
),
'ENSMUST00000119961' => array(
'start' => '8654465',
'end' => '8654824',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6798-001'
),
'ENSMUST00000138642' => array(
'start' => '8542705',
'end' => '8548255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb6-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000165584' => array(
[maximum depth reached]
),
'ENSG00000204648' => array(
[maximum depth reached]
),
'ENSG00000227302' => array(
[maximum depth reached]
),
'ENSG00000230100' => array(
[maximum depth reached]
),
'ENSG00000237345' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
),
'ENSG00000270747' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Testis',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Testis',
(int) 21 => 'Liver',
(int) 22 => 'Brain',
(int) 23 => 'Adipose'
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000204368' => array(
[maximum depth reached]
),
'ENSG00000229662' => array(
[maximum depth reached]
),
'ENSG00000234780' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Brain'
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
'ENSG00000165584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Placenta',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000071816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis'
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000062814' => array(
[maximum depth reached]
),
'ENSMUSG00000083892' => array(
[maximum depth reached]
),
'ENSMUSG00000095316' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Testis'
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000068219' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis'
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000071816' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Liver'
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000079697' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta',
(int) 2 => 'Testis',
(int) 3 => 'Liver'
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
),
'ENSMUSG00000081410' => array(
[maximum depth reached]
),
'ENSMUSG00000082458' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Adipose',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Ovary'
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000079702' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0005',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '52644567',
'seq_end' => '52790305',
'region_length' => '145738',
'region_type' => 'CGP',
'el_id' => 'ENSG00000241476-ENSG00000268447'
)
)
$gene_el = array(
'ENST00000298396' => array(
'Testis' => array(
'average_FPKM' => '4.178',
'stddev_FPKM' => '0.28'
)
),
'ENST00000376893' => array(
'Heart' => array(
'average_FPKM' => '0.053',
'stddev_FPKM' => '0.00'
)
),
'ENST00000376895' => array(
'Testis' => array(
'average_FPKM' => '3.675',
'stddev_FPKM' => '0.39'
)
),
'ENST00000612497' => array()
)
$gene_key = 'ENSG00000165584'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000612497'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000126752' => 'synovial sarcoma, X breakpoint 1',
'ENSG00000165583' => 'synovial sarcoma, X breakpoint 5',
'ENSG00000165584' => 'synovial sarcoma, X breakpoint 3',
'ENSG00000204648' => 'synovial sarcoma, X breakpoint 9',
'ENSG00000227302' => 'SSX family pseudogene 9',
'ENSG00000230100' => null,
'ENSG00000232813' => null,
'ENSG00000234391' => null,
'ENSG00000237345' => null,
'ENSG00000241207' => null,
'ENSG00000270747' => null,
'ENSG00000204368' => null,
'ENSG00000229662' => null,
'ENSG00000231568' => null,
'ENSG00000234780' => null,
'ENSG00000252856' => 'RNA, 5S ribosomal pseudogene 503',
'ENSG00000225055' => null,
'ENSG00000234448' => null,
'ENSG00000268009' => 'synovial sarcoma, X breakpoint 4',
'ENSG00000187754' => 'synovial sarcoma, X breakpoint 7',
'ENSG00000222608' => 'RNA, 5S ribosomal pseudogene 504',
'ENSG00000225508' => 'SSX family pseudogene 5',
'ENSG00000228354' => null,
'ENSG00000237275' => null,
'ENSG00000241476' => 'synovial sarcoma, X breakpoint 2',
'ENSG00000223958' => null,
'ENSG00000225397' => null,
'ENSG00000226867' => null,
'ENSG00000229826' => null,
'ENSG00000268447' => 'synovial sarcoma, X breakpoint 2B',
'ENSG00000269281' => null,
'ENSG00000269791' => 'synovial sarcoma, X breakpoint 4B',
'ENSMUSG00000023165' => 'synovial sarcoma, X member B, breakpoint 2',
'ENSMUSG00000079704' => 'predicted gene 14459',
'ENSMUSG00000035371' => 'synovial sarcoma, X breakpoint 9',
'ENSMUSG00000071816' => 'synovial sarcoma, X member B, breakpoint 5',
'ENSMUSG00000062814' => 'synovial sarcoma, X member A, breakpoint 1',
'ENSMUSG00000083892' => 'predicted gene 1848',
'ENSMUSG00000095316' => 'predicted gene, 21876',
'ENSMUSG00000068218' => 'synovial sarcoma, X member B, breakpoint 9',
'ENSMUSG00000079705' => 'synovial sarcoma, X member B, breakpoint 1',
'ENSMUSG00000068219' => 'synovial sarcoma, X member B, breakpoint 10',
'ENSMUSG00000079699' => 'predicted gene 6592',
'ENSMUSG00000082129' => 'predicted gene 14502',
'ENSMUSG00000079697' => 'predicted gene 5751',
'ENSMUSG00000079701' => 'synovial sarcoma, X member B, breakpoint 3',
'ENSMUSG00000079703' => 'synovial sarcoma, X member B, breakpoint 8',
'ENSMUSG00000080897' => 'predicted gene 14500',
'ENSMUSG00000081410' => 'predicted pseudogene 6797',
'ENSMUSG00000082458' => 'predicted gene 9430',
'ENSMUSG00000082496' => 'predicted gene 6798',
'ENSMUSG00000079702' => 'synovial sarcoma, X member B, breakpoint 6'
),
'gene_name_arr' => array(
'ENSG00000126752' => 'SSX1',
'ENSG00000165583' => 'SSX5',
'ENSG00000165584' => 'SSX3',
'ENSG00000204648' => 'SSX9',
'ENSG00000227302' => 'SSXP9',
'ENSG00000230100' => 'RP11-344N17.8',
'ENSG00000232813' => 'RP11-344N17.2',
'ENSG00000234391' => 'RP11-344N17.6',
'ENSG00000237345' => 'RP11-344N17.11',
'ENSG00000241207' => 'RP11-344N17.3',
'ENSG00000270747' => 'RP11-344N17.15',
'ENSG00000204368' => 'RP11-552E4.3',
'ENSG00000229662' => 'RP11-552E4.5',
'ENSG00000231568' => 'RP11-552E4.4',
'ENSG00000234780' => 'RP11-552E4.2',
'ENSG00000252856' => 'RNA5SP503',
'ENSG00000225055' => 'RP11-344N17.9',
'ENSG00000234448' => 'RP11-344N17.13',
'ENSG00000268009' => 'SSX4',
'ENSG00000187754' => 'SSX7',
'ENSG00000222608' => 'RNA5SP504',
'ENSG00000225508' => 'SSXP5',
'ENSG00000228354' => 'RP11-552J9.9',
'ENSG00000237275' => 'RP11-552J9.11',
'ENSG00000241476' => 'SSX2',
'ENSG00000223958' => 'RP11-552J9.12',
'ENSG00000225397' => 'RP11-552J9.13',
'ENSG00000226867' => 'RP13-77O11.8',
'ENSG00000229826' => 'RP11-552J9.14',
'ENSG00000268447' => 'SSX2B',
'ENSG00000269281' => 'RP11-564H18.1',
'ENSG00000269791' => 'SSX4B',
'ENSMUSG00000023165' => 'Ssxb2',
'ENSMUSG00000079704' => 'Gm14459',
'ENSMUSG00000035371' => 'Ssx9',
'ENSMUSG00000071816' => 'Ssxb5',
'ENSMUSG00000062814' => 'Ssxa1',
'ENSMUSG00000083892' => 'Gm1848',
'ENSMUSG00000095316' => 'Gm21876',
'ENSMUSG00000068218' => 'Ssxb9',
'ENSMUSG00000079705' => 'Ssxb1',
'ENSMUSG00000068219' => 'Ssxb10',
'ENSMUSG00000079699' => 'Gm6592',
'ENSMUSG00000082129' => 'Gm14502',
'ENSMUSG00000079697' => 'Gm5751',
'ENSMUSG00000079701' => 'Ssxb3',
'ENSMUSG00000079703' => 'Ssxb8',
'ENSMUSG00000080897' => 'Gm14500',
'ENSMUSG00000081410' => 'Gm6797',
'ENSMUSG00000082458' => 'Gm9430',
'ENSMUSG00000082496' => 'Gm6798',
'ENSMUSG00000079702' => 'Ssxb6'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 29 => 'Kidney',
(int) 34 => 'Liver',
(int) 43 => 'Lung',
(int) 46 => 'Muscle',
(int) 48 => 'Ovary',
(int) 57 => 'Placenta',
(int) 68 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 108,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000376919' => array(
'start' => '48255317',
'end' => '48267444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX1-001'
),
'ENST00000311798' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-001'
),
'ENST00000347757' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-201'
),
'ENST00000376923' => array(
'start' => '48186220',
'end' => '48195358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-002'
),
'ENST00000403001' => array(
'start' => '48186775',
'end' => '48192381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-003'
),
'ENST00000613884' => array(
'start' => '48186753',
'end' => '48277578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-202'
),
'ENST00000298396' => array(
'start' => '48346428',
'end' => '48356666',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-001'
),
'ENST00000376893' => array(
'start' => '48348257',
'end' => '48356707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-002'
),
'ENST00000376895' => array(
'start' => '48346626',
'end' => '48352247',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX3-003'
),
'ENST00000612497' => array(
'start' => '48349446',
'end' => '48355272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-004'
),
'ENST00000376909' => array(
'start' => '48296816',
'end' => '48304867',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'SSX9-001'
),
'ENST00000608568' => array(
'start' => '48301550',
'end' => '48306179',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX9-002'
),
'ENST00000417503' => array(
'start' => '48322349',
'end' => '48326683',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP9-001'
),
'ENST00000422410' => array(
'start' => '48333675',
'end' => '48334439',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-344N17.8-001'
),
'ENST00000433189' => array(
'start' => '48274904',
'end' => '48275047',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.2-001'
),
'ENST00000453735' => array(
'start' => '48306769',
'end' => '48309055',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.6-001'
),
'ENST00000445444' => array(
'start' => '48279423',
'end' => '48281792',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.11-001'
),
'ENST00000456455' => array(
'start' => '48276704',
'end' => '48277578',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP11-344N17.3-001'
),
'ENST00000603331' => array(
'start' => '48336899',
'end' => '48337169',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.15-001'
),
'ENST00000433276' => array(
'start' => '48212791',
'end' => '48218010',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.3-001'
),
'ENST00000441060' => array(
'start' => '48244894',
'end' => '48245745',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.5-001'
),
'ENST00000429428' => array(
'start' => '48228833',
'end' => '48228959',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.4-001'
),
'ENST00000437312' => array(
'start' => '48197221',
'end' => '48199431',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.2-001'
),
'ENST00000517047' => array(
'start' => '48206258',
'end' => '48206374',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP503-201'
),
'ENST00000452266' => array(
'start' => '48357125',
'end' => '48359495',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.9-001'
),
'ENST00000433136' => array(
'start' => '48371905',
'end' => '48372095',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.13-001'
),
'ENST00000595689' => array(
'start' => '48383527',
'end' => '48393347',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-001'
),
'ENST00000620320' => array(
'start' => '48383516',
'end' => '48393343',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-201'
),
'ENST00000298181' => array(
'start' => '52644090',
'end' => '52654900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX7-001'
),
'ENST00000410676' => array(
'start' => '52665231',
'end' => '52665347',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP504-201'
),
'ENST00000443473' => array(
'start' => '52672718',
'end' => '52677051',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP5-001'
),
'ENST00000450868' => array(
'start' => '52655207',
'end' => '52657254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.9-001'
),
'ENST00000440592' => array(
'start' => '52687363',
'end' => '52687633',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.11-001'
),
'ENST00000336777' => array(
'start' => '52696896',
'end' => '52707161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-001'
),
'ENST00000337502' => array(
'start' => '52696896',
'end' => '52707189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-002'
),
'ENST00000476392' => array(
'start' => '52697231',
'end' => '52702728',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SSX2-003'
),
'ENST00000610779' => array(
'start' => '52644567',
'end' => '52705838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-201'
),
'ENST00000435089' => array(
'start' => '52707602',
'end' => '52709933',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.12-001'
),
'ENST00000454598' => array(
'start' => '52722338',
'end' => '52722524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.13-001'
),
'ENST00000434905' => array(
'start' => '52781452',
'end' => '52785786',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-77O11.8-001'
),
'ENST00000443639' => array(
'start' => '52735901',
'end' => '52736107',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.14-001'
),
'ENST00000288839' => array(
'start' => '52755702',
'end' => '52761325',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX2B-003'
),
'ENST00000596480' => array(
'start' => '52751241',
'end' => '52761535',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-002'
),
'ENST00000612490' => array(
'start' => '52751269',
'end' => '52761536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-001'
),
'ENST00000616191' => array(
'start' => '52751132',
'end' => '52790305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-201'
),
'ENST00000599675' => array(
'start' => '52770809',
'end' => '52771080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-564H18.1-001'
),
'ENST00000595235' => array(
'start' => '48402078',
'end' => '48411899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-001'
),
'ENST00000619890' => array(
'start' => '48402082',
'end' => '48411910',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-201'
),
'ENSMUST00000023931' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-001'
),
'ENSMUST00000103000' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-002'
),
'ENSMUST00000115573' => array(
'start' => '8514052',
'end' => '8524954',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm14459-001'
),
'ENSMUST00000103001' => array(
'start' => '8748432',
'end' => '8754587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssx9-001'
),
'ENSMUST00000089370' => array(
'start' => '8803691',
'end' => '8809386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb5-001'
),
'ENSMUST00000072593' => array(
'start' => '21115820',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-201'
),
'ENSMUST00000133987' => array(
'start' => '21118372',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-001'
),
'ENSMUST00000120711' => array(
'start' => '21146844',
'end' => '21147640',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm1848-001'
),
'ENSMUST00000096511' => array(
'start' => '21174439',
'end' => '21175653',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21876-201'
),
'ENSMUST00000115584' => array(
'start' => '8366978',
'end' => '8375390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb9-001'
),
'ENSMUST00000037297' => array(
'start' => '8413305',
'end' => '8422157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb1-001'
),
'ENSMUST00000103003' => array(
'start' => '8327424',
'end' => '8336237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb10-001'
),
'ENSMUST00000115563' => array(
'start' => '8843994',
'end' => '8849607',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm6592-001'
),
'ENSMUST00000118154' => array(
'start' => '8830322',
'end' => '8830434',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14502-001'
),
'ENSMUST00000115561' => array(
'start' => '8874253',
'end' => '8880750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5751-001'
),
'ENSMUST00000089374' => array(
'start' => '8583404',
'end' => '8591816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-001'
),
'ENSMUST00000089379' => array(
'start' => '8583544',
'end' => '8589246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-201'
),
'ENSMUST00000101690' => array(
'start' => '8685331',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-201'
),
'ENSMUST00000185125' => array(
'start' => '8684887',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-001'
),
'ENSMUST00000121647' => array(
'start' => '8604420',
'end' => '8604532',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14500-001'
),
'ENSMUST00000119440' => array(
'start' => '8639622',
'end' => '8645273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm6797-001'
),
'ENSMUST00000121232' => array(
'start' => '8662302',
'end' => '8663828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9430-001'
),
'ENSMUST00000119961' => array(
'start' => '8654465',
'end' => '8654824',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6798-001'
),
'ENSMUST00000138642' => array(
'start' => '8542705',
'end' => '8548255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb6-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000165584' => array(
[maximum depth reached]
),
'ENSG00000204648' => array(
[maximum depth reached]
),
'ENSG00000227302' => array(
[maximum depth reached]
),
'ENSG00000230100' => array(
[maximum depth reached]
),
'ENSG00000237345' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
),
'ENSG00000270747' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Testis',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Testis',
(int) 21 => 'Liver',
(int) 22 => 'Brain',
(int) 23 => 'Adipose'
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000204368' => array(
[maximum depth reached]
),
'ENSG00000229662' => array(
[maximum depth reached]
),
'ENSG00000234780' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Brain'
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
'ENSG00000165584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Placenta',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000071816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis'
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000062814' => array(
[maximum depth reached]
),
'ENSMUSG00000083892' => array(
[maximum depth reached]
),
'ENSMUSG00000095316' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Testis'
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000068219' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis'
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000071816' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Liver'
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000079697' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta',
(int) 2 => 'Testis',
(int) 3 => 'Liver'
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
),
'ENSMUSG00000081410' => array(
[maximum depth reached]
),
'ENSMUSG00000082458' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Adipose',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Ovary'
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000079702' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000126752' => 'synovial sarcoma, X breakpoint 1',
'ENSG00000165583' => 'synovial sarcoma, X breakpoint 5',
'ENSG00000165584' => 'synovial sarcoma, X breakpoint 3',
'ENSG00000204648' => 'synovial sarcoma, X breakpoint 9',
'ENSG00000227302' => 'SSX family pseudogene 9',
'ENSG00000230100' => null,
'ENSG00000232813' => null,
'ENSG00000234391' => null,
'ENSG00000237345' => null,
'ENSG00000241207' => null,
'ENSG00000270747' => null,
'ENSG00000204368' => null,
'ENSG00000229662' => null,
'ENSG00000231568' => null,
'ENSG00000234780' => null,
'ENSG00000252856' => 'RNA, 5S ribosomal pseudogene 503',
'ENSG00000225055' => null,
'ENSG00000234448' => null,
'ENSG00000268009' => 'synovial sarcoma, X breakpoint 4',
'ENSG00000187754' => 'synovial sarcoma, X breakpoint 7',
'ENSG00000222608' => 'RNA, 5S ribosomal pseudogene 504',
'ENSG00000225508' => 'SSX family pseudogene 5',
'ENSG00000228354' => null,
'ENSG00000237275' => null,
'ENSG00000241476' => 'synovial sarcoma, X breakpoint 2',
'ENSG00000223958' => null,
'ENSG00000225397' => null,
'ENSG00000226867' => null,
'ENSG00000229826' => null,
'ENSG00000268447' => 'synovial sarcoma, X breakpoint 2B',
'ENSG00000269281' => null,
'ENSG00000269791' => 'synovial sarcoma, X breakpoint 4B',
'ENSMUSG00000023165' => 'synovial sarcoma, X member B, breakpoint 2',
'ENSMUSG00000079704' => 'predicted gene 14459',
'ENSMUSG00000035371' => 'synovial sarcoma, X breakpoint 9',
'ENSMUSG00000071816' => 'synovial sarcoma, X member B, breakpoint 5',
'ENSMUSG00000062814' => 'synovial sarcoma, X member A, breakpoint 1',
'ENSMUSG00000083892' => 'predicted gene 1848',
'ENSMUSG00000095316' => 'predicted gene, 21876',
'ENSMUSG00000068218' => 'synovial sarcoma, X member B, breakpoint 9',
'ENSMUSG00000079705' => 'synovial sarcoma, X member B, breakpoint 1',
'ENSMUSG00000068219' => 'synovial sarcoma, X member B, breakpoint 10',
'ENSMUSG00000079699' => 'predicted gene 6592',
'ENSMUSG00000082129' => 'predicted gene 14502',
'ENSMUSG00000079697' => 'predicted gene 5751',
'ENSMUSG00000079701' => 'synovial sarcoma, X member B, breakpoint 3',
'ENSMUSG00000079703' => 'synovial sarcoma, X member B, breakpoint 8',
'ENSMUSG00000080897' => 'predicted gene 14500',
'ENSMUSG00000081410' => 'predicted pseudogene 6797',
'ENSMUSG00000082458' => 'predicted gene 9430',
'ENSMUSG00000082496' => 'predicted gene 6798',
'ENSMUSG00000079702' => 'synovial sarcoma, X member B, breakpoint 6'
)
$gene_name_arr = array(
'ENSG00000126752' => 'SSX1',
'ENSG00000165583' => 'SSX5',
'ENSG00000165584' => 'SSX3',
'ENSG00000204648' => 'SSX9',
'ENSG00000227302' => 'SSXP9',
'ENSG00000230100' => 'RP11-344N17.8',
'ENSG00000232813' => 'RP11-344N17.2',
'ENSG00000234391' => 'RP11-344N17.6',
'ENSG00000237345' => 'RP11-344N17.11',
'ENSG00000241207' => 'RP11-344N17.3',
'ENSG00000270747' => 'RP11-344N17.15',
'ENSG00000204368' => 'RP11-552E4.3',
'ENSG00000229662' => 'RP11-552E4.5',
'ENSG00000231568' => 'RP11-552E4.4',
'ENSG00000234780' => 'RP11-552E4.2',
'ENSG00000252856' => 'RNA5SP503',
'ENSG00000225055' => 'RP11-344N17.9',
'ENSG00000234448' => 'RP11-344N17.13',
'ENSG00000268009' => 'SSX4',
'ENSG00000187754' => 'SSX7',
'ENSG00000222608' => 'RNA5SP504',
'ENSG00000225508' => 'SSXP5',
'ENSG00000228354' => 'RP11-552J9.9',
'ENSG00000237275' => 'RP11-552J9.11',
'ENSG00000241476' => 'SSX2',
'ENSG00000223958' => 'RP11-552J9.12',
'ENSG00000225397' => 'RP11-552J9.13',
'ENSG00000226867' => 'RP13-77O11.8',
'ENSG00000229826' => 'RP11-552J9.14',
'ENSG00000268447' => 'SSX2B',
'ENSG00000269281' => 'RP11-564H18.1',
'ENSG00000269791' => 'SSX4B',
'ENSMUSG00000023165' => 'Ssxb2',
'ENSMUSG00000079704' => 'Gm14459',
'ENSMUSG00000035371' => 'Ssx9',
'ENSMUSG00000071816' => 'Ssxb5',
'ENSMUSG00000062814' => 'Ssxa1',
'ENSMUSG00000083892' => 'Gm1848',
'ENSMUSG00000095316' => 'Gm21876',
'ENSMUSG00000068218' => 'Ssxb9',
'ENSMUSG00000079705' => 'Ssxb1',
'ENSMUSG00000068219' => 'Ssxb10',
'ENSMUSG00000079699' => 'Gm6592',
'ENSMUSG00000082129' => 'Gm14502',
'ENSMUSG00000079697' => 'Gm5751',
'ENSMUSG00000079701' => 'Ssxb3',
'ENSMUSG00000079703' => 'Ssxb8',
'ENSMUSG00000080897' => 'Gm14500',
'ENSMUSG00000081410' => 'Gm6797',
'ENSMUSG00000082458' => 'Gm9430',
'ENSMUSG00000082496' => 'Gm6798',
'ENSMUSG00000079702' => 'Ssxb6'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48255317',
'seq_end' => '48356707',
'region_length' => '101390',
'region_type' => 'CGP',
'el_id' => 'ENSG00000126752-ENSG00000165584'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0002',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48186220',
'seq_end' => '48277578',
'region_length' => '91358',
'region_type' => 'CGP',
'el_id' => 'ENSG00000165583-ENSG00000165583'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0003',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48346428',
'seq_end' => '48393347',
'region_length' => '46919',
'region_type' => 'CGP',
'el_id' => 'ENSG00000165584-ENSG00000268009'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0004',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '52644090',
'seq_end' => '52707189',
'region_length' => '63099',
'region_type' => 'CGP',
'el_id' => 'ENSG00000187754-ENSG00000241476'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0005',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '52644567',
'seq_end' => '52790305',
'region_length' => '145738',
'region_type' => 'CGP',
'el_id' => 'ENSG00000241476-ENSG00000268447'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0006',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '48383516',
'seq_end' => '48411910',
'region_length' => '28394',
'region_type' => 'CGP',
'el_id' => 'ENSG00000268009-ENSG00000269791'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0007',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8454345',
'seq_end' => '8524954',
'region_length' => '70609',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000023165-ENSMUSG00000079704'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0008',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8748432',
'seq_end' => '8809386',
'region_length' => '60954',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000035371-ENSMUSG00000071816'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0009',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '21115820',
'seq_end' => '21175653',
'region_length' => '59833',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062814-ENSMUSG00000095316'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000A',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8366978',
'seq_end' => '8422157',
'region_length' => '55179',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000068218-ENSMUSG00000079705'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000B',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8327424',
'seq_end' => '8375390',
'region_length' => '47966',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000068219-ENSMUSG00000068218'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000C',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8803691',
'seq_end' => '8849607',
'region_length' => '45916',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000071816-ENSMUSG00000079699'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000D',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8843994',
'seq_end' => '8880750',
'region_length' => '36756',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079699-ENSMUSG00000079697'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000E',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8583404',
'seq_end' => '8690844',
'region_length' => '107440',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079701-ENSMUSG00000079703'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000F',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8542705',
'seq_end' => '8591816',
'region_length' => '49111',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079702-ENSMUSG00000079701'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000G',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8684887',
'seq_end' => '8754587',
'region_length' => '69700',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079703-ENSMUSG00000035371'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000H',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8514052',
'seq_end' => '8548255',
'region_length' => '34203',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079704-ENSMUSG00000079702'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_000I',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '8413305',
'seq_end' => '8461726',
'region_length' => '48421',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079705-ENSMUSG00000023165'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 29 => 'Kidney',
(int) 34 => 'Liver',
(int) 43 => 'Lung',
(int) 46 => 'Muscle',
(int) 48 => 'Ovary',
(int) 57 => 'Placenta',
(int) 68 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 108
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000376919' => array(
'start' => '48255317',
'end' => '48267444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX1-001'
),
'ENST00000311798' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-001'
),
'ENST00000347757' => array(
'start' => '48186220',
'end' => '48196763',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-201'
),
'ENST00000376923' => array(
'start' => '48186220',
'end' => '48195358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-002'
),
'ENST00000403001' => array(
'start' => '48186775',
'end' => '48192381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-003'
),
'ENST00000613884' => array(
'start' => '48186753',
'end' => '48277578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX5-202'
),
'ENST00000298396' => array(
'start' => '48346428',
'end' => '48356666',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-001'
),
'ENST00000376893' => array(
'start' => '48348257',
'end' => '48356707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-002'
),
'ENST00000376895' => array(
'start' => '48346626',
'end' => '48352247',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX3-003'
),
'ENST00000612497' => array(
'start' => '48349446',
'end' => '48355272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX3-004'
),
'ENST00000376909' => array(
'start' => '48296816',
'end' => '48304867',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'SSX9-001'
),
'ENST00000608568' => array(
'start' => '48301550',
'end' => '48306179',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX9-002'
),
'ENST00000417503' => array(
'start' => '48322349',
'end' => '48326683',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP9-001'
),
'ENST00000422410' => array(
'start' => '48333675',
'end' => '48334439',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-344N17.8-001'
),
'ENST00000433189' => array(
'start' => '48274904',
'end' => '48275047',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.2-001'
),
'ENST00000453735' => array(
'start' => '48306769',
'end' => '48309055',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.6-001'
),
'ENST00000445444' => array(
'start' => '48279423',
'end' => '48281792',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.11-001'
),
'ENST00000456455' => array(
'start' => '48276704',
'end' => '48277578',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP11-344N17.3-001'
),
'ENST00000603331' => array(
'start' => '48336899',
'end' => '48337169',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.15-001'
),
'ENST00000433276' => array(
'start' => '48212791',
'end' => '48218010',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.3-001'
),
'ENST00000441060' => array(
'start' => '48244894',
'end' => '48245745',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.5-001'
),
'ENST00000429428' => array(
'start' => '48228833',
'end' => '48228959',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.4-001'
),
'ENST00000437312' => array(
'start' => '48197221',
'end' => '48199431',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552E4.2-001'
),
'ENST00000517047' => array(
'start' => '48206258',
'end' => '48206374',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP503-201'
),
'ENST00000452266' => array(
'start' => '48357125',
'end' => '48359495',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.9-001'
),
'ENST00000433136' => array(
'start' => '48371905',
'end' => '48372095',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-344N17.13-001'
),
'ENST00000595689' => array(
'start' => '48383527',
'end' => '48393347',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-001'
),
'ENST00000620320' => array(
'start' => '48383516',
'end' => '48393343',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4-201'
),
'ENST00000298181' => array(
'start' => '52644090',
'end' => '52654900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX7-001'
),
'ENST00000410676' => array(
'start' => '52665231',
'end' => '52665347',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP504-201'
),
'ENST00000443473' => array(
'start' => '52672718',
'end' => '52677051',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'SSXP5-001'
),
'ENST00000450868' => array(
'start' => '52655207',
'end' => '52657254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.9-001'
),
'ENST00000440592' => array(
'start' => '52687363',
'end' => '52687633',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.11-001'
),
'ENST00000336777' => array(
'start' => '52696896',
'end' => '52707161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-001'
),
'ENST00000337502' => array(
'start' => '52696896',
'end' => '52707189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-002'
),
'ENST00000476392' => array(
'start' => '52697231',
'end' => '52702728',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SSX2-003'
),
'ENST00000610779' => array(
'start' => '52644567',
'end' => '52705838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2-201'
),
'ENST00000435089' => array(
'start' => '52707602',
'end' => '52709933',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.12-001'
),
'ENST00000454598' => array(
'start' => '52722338',
'end' => '52722524',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.13-001'
),
'ENST00000434905' => array(
'start' => '52781452',
'end' => '52785786',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP13-77O11.8-001'
),
'ENST00000443639' => array(
'start' => '52735901',
'end' => '52736107',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-552J9.14-001'
),
'ENST00000288839' => array(
'start' => '52755702',
'end' => '52761325',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SSX2B-003'
),
'ENST00000596480' => array(
'start' => '52751241',
'end' => '52761535',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-002'
),
'ENST00000612490' => array(
'start' => '52751269',
'end' => '52761536',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-001'
),
'ENST00000616191' => array(
'start' => '52751132',
'end' => '52790305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX2B-201'
),
'ENST00000599675' => array(
'start' => '52770809',
'end' => '52771080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-564H18.1-001'
),
'ENST00000595235' => array(
'start' => '48402078',
'end' => '48411899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-001'
),
'ENST00000619890' => array(
'start' => '48402082',
'end' => '48411910',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SSX4B-201'
),
'ENSMUST00000023931' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-001'
),
'ENSMUST00000103000' => array(
'start' => '8454345',
'end' => '8461726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb2-002'
),
'ENSMUST00000115573' => array(
'start' => '8514052',
'end' => '8524954',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm14459-001'
),
'ENSMUST00000103001' => array(
'start' => '8748432',
'end' => '8754587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssx9-001'
),
'ENSMUST00000089370' => array(
'start' => '8803691',
'end' => '8809386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb5-001'
),
'ENSMUST00000072593' => array(
'start' => '21115820',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-201'
),
'ENSMUST00000133987' => array(
'start' => '21118372',
'end' => '21121192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxa1-001'
),
'ENSMUST00000120711' => array(
'start' => '21146844',
'end' => '21147640',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm1848-001'
),
'ENSMUST00000096511' => array(
'start' => '21174439',
'end' => '21175653',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21876-201'
),
'ENSMUST00000115584' => array(
'start' => '8366978',
'end' => '8375390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb9-001'
),
'ENSMUST00000037297' => array(
'start' => '8413305',
'end' => '8422157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb1-001'
),
'ENSMUST00000103003' => array(
'start' => '8327424',
'end' => '8336237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb10-001'
),
'ENSMUST00000115563' => array(
'start' => '8843994',
'end' => '8849607',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm6592-001'
),
'ENSMUST00000118154' => array(
'start' => '8830322',
'end' => '8830434',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14502-001'
),
'ENSMUST00000115561' => array(
'start' => '8874253',
'end' => '8880750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5751-001'
),
'ENSMUST00000089374' => array(
'start' => '8583404',
'end' => '8591816',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-001'
),
'ENSMUST00000089379' => array(
'start' => '8583544',
'end' => '8589246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb3-201'
),
'ENSMUST00000101690' => array(
'start' => '8685331',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-201'
),
'ENSMUST00000185125' => array(
'start' => '8684887',
'end' => '8690844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb8-001'
),
'ENSMUST00000121647' => array(
'start' => '8604420',
'end' => '8604532',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14500-001'
),
'ENSMUST00000119440' => array(
'start' => '8639622',
'end' => '8645273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm6797-001'
),
'ENSMUST00000121232' => array(
'start' => '8662302',
'end' => '8663828',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9430-001'
),
'ENSMUST00000119961' => array(
'start' => '8654465',
'end' => '8654824',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6798-001'
),
'ENSMUST00000138642' => array(
'start' => '8542705',
'end' => '8548255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ssxb6-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000Y9_0001' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000165584' => array(
[maximum depth reached]
),
'ENSG00000204648' => array(
[maximum depth reached]
),
'ENSG00000227302' => array(
[maximum depth reached]
),
'ENSG00000230100' => array(
[maximum depth reached]
),
'ENSG00000237345' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
),
'ENSG00000270747' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Testis',
(int) 11 => 'Testis',
(int) 12 => 'Testis',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Kidney',
(int) 19 => 'Muscle',
(int) 20 => 'Testis',
(int) 21 => 'Liver',
(int) 22 => 'Brain',
(int) 23 => 'Adipose'
)
),
'CIL_0000Y9_0002' => array(
'genes_in_region' => array(
'ENSG00000126752' => array(
[maximum depth reached]
),
'ENSG00000165583' => array(
[maximum depth reached]
),
'ENSG00000204368' => array(
[maximum depth reached]
),
'ENSG00000229662' => array(
[maximum depth reached]
),
'ENSG00000234780' => array(
[maximum depth reached]
),
'ENSG00000241207' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Adrenal',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Brain'
)
),
'CIL_0000Y9_0003' => array(
'genes_in_region' => array(
'ENSG00000165584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Placenta',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000071816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis'
)
),
'CIL_0000Y9_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000062814' => array(
[maximum depth reached]
),
'ENSMUSG00000083892' => array(
[maximum depth reached]
),
'ENSMUSG00000095316' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Testis'
)
),
'CIL_0000Y9_000A' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
),
'CIL_0000Y9_000B' => array(
'genes_in_region' => array(
'ENSMUSG00000068218' => array(
[maximum depth reached]
),
'ENSMUSG00000068219' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Ovary',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Placenta',
(int) 6 => 'Testis'
)
),
'CIL_0000Y9_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000071816' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Liver'
)
),
'CIL_0000Y9_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000079697' => array(
[maximum depth reached]
),
'ENSMUSG00000079699' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta',
(int) 2 => 'Testis',
(int) 3 => 'Liver'
)
),
'CIL_0000Y9_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
),
'ENSMUSG00000081410' => array(
[maximum depth reached]
),
'ENSMUSG00000082458' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Adipose',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Ovary'
)
),
'CIL_0000Y9_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000079701' => array(
[maximum depth reached]
),
'ENSMUSG00000079702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000035371' => array(
[maximum depth reached]
),
'ENSMUSG00000079703' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000079702' => array(
[maximum depth reached]
),
'ENSMUSG00000079704' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_0000Y9_000I' => array(
'genes_in_region' => array(
'ENSMUSG00000023165' => array(
[maximum depth reached]
),
'ENSMUSG00000079705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Ovary',
(int) 5 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000Y9_0005',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '52644567',
'seq_end' => '52790305',
'region_length' => '145738',
'region_type' => 'CGP',
'el_id' => 'ENSG00000241476-ENSG00000268447'
)
)
$gene_el = array(
'ENST00000298396' => array(
'Testis' => array(
'average_FPKM' => '4.178',
'stddev_FPKM' => '0.28'
)
),
'ENST00000376893' => array(
'Heart' => array(
'average_FPKM' => '0.053',
'stddev_FPKM' => '0.00'
)
),
'ENST00000376895' => array(
'Testis' => array(
'average_FPKM' => '3.675',
'stddev_FPKM' => '0.39'
)
),
'ENST00000612497' => array()
)
$gene_key = 'ENSG00000165584'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000612497'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(SSX1)