C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-pass membrane protein with coiled-coil domains 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165935 SMCO2 9606 + 12:27466810-27502185 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298876 SMCO2-002 27466810-27502185 protein_coding
  ENST00000416383 SMCO2-201 27466810-27502185 protein_coding
  ENST00000535986 SMCO2-001 27470632-27502185 protein_coding
  ENST00000538647 SMCO2-005 27474896-27495798 processed_transcript
  ENST00000541168 SMCO2-004 27493836-27502147 retained_intron
  ENST00000543991 SMCO2-003 27470622-27473117 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000298876ENST00000535986ENST00000538647ENST00000541168ENST00000543991
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000298876 N/A 0.143±0.00 0.066±0.00 N/A 0.015±0.00 0.143±0.00 N/A 0.118±0.00 0.011±0.00 0.056±0.00 0.282±0.00
ENST00000535986 N/A N/A N/A N/A 0.193±0.00 N/A 0.015±0.00 N/A N/A 0.049±0.00 0.654±0.00
ENST00000538647 0.119±0.00 N/A N/A 0.079±0.00 0.174±0.00 N/A 0.165±0.00 N/A 0.840±0.73 0.244±0.00 0.975±0.00
ENST00000541168 N/A 0.017±0.00 0.090±0.00 N/A N/A 0.022±0.00 N/A N/A 0.243±0.19 0.025±0.00 N/A
ENST00000543991 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056I CIL_00056I_0001 CGP 12:27332854-27502185
CIL_00056H CIL_00056H_0001 CGP 12:27466810-27695564

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030292 Smco2 single-pass membrane protein with coiled-coil domains 2 protein_coding Mus_musculus

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