C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calmin (calponin-like, transmembrane)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165959 CLMN 9606 - 14:95181940-95319906 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298912 CLMN-001 95181940-95319906 protein_coding
  ENST00000553733 CLMN-009 95221733-95319878 nonsense_mediated_decay
  ENST00000555336 CLMN-003 95213225-95296243 protein_coding
  ENST00000555615 CLMN-010 95213320-95307773 protein_coding
  ENST00000556416 CLMN-007 95191713-95193917 retained_intron
  ENST00000556441 CLMN-005 95191531-95194300 protein_coding
  ENST00000556454 CLMN-002 95191530-95210851 retained_intron
  ENST00000557215 CLMN-008 95191527-95194395 processed_transcript
  ENST00000557696 CLMN-006 95191527-95196584 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298912ENST00000555336ENST00000556454ENST00000557215
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298912 1.433±0.00 1.525±0.00 3.070±0.00 3.720±2.51 3.369±0.76 1.920±0.73 0.986±0.00 5.103±3.12 2.312±2.06 0.871±0.24 0.071±0.00 1.054±0.29 0.436±0.00 1.869±0.22
ENST00000555336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.470±0.00
ENST00000556454 3.447±0.00 1.725±0.00 N/A 3.074±1.91 4.757±1.37 3.655±0.00 0.843±0.00 2.487±0.00 4.040±2.86 2.438±0.60 0.717±0.00 1.203±0.27 1.642±0.31 17.756±2.95
ENST00000557215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.249±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0001 VISTA 14:95070077-95673144
CIL_0003QP CIL_0003QP_0001 CGP 14:95086228-95319906
CIL_00099M CIL_00099M_0001 VISTA 14:95131820-95732594
CIL_0008Z4 CIL_0008Z4_0001 VISTA 14:95131888-95732401

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008285 IEA negative regulation of cell proliferation
GO:0016021 IEA integral component of membrane
GO:0031175 IEA neuron projection development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043667 calmin (calponin-like, transmembrane) protein_coding Danio_rerio
ENSDARG00000068624 SYNE1 calmin (calponin-like, transmembrane) protein_coding Danio_rerio
ENSDARG00000096867 CLMN calmin (calponin-like, transmembrane) protein_coding Danio_rerio
ENSMUSG00000021097 Clmn calmin protein_coding Mus_musculus

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