C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calmin (calponin-like, transmembrane)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298912 CLMN-001 ENSG00000165959 9606 - 14:95181940-95319906 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298912
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298912 1.433±0.00 1.525±0.00 3.070±0.00 3.720±2.51 3.369±0.76 1.920±0.73 0.986±0.00 5.103±3.12 2.312±2.06 0.871±0.24 0.071±0.00 1.054±0.29 0.436±0.00 1.869±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0001 VISTA 14:95070077-95673144
CIL_0003QP CIL_0003QP_0001 CGP 14:95086228-95319906
CIL_00099M CIL_00099M_0001 VISTA 14:95131820-95732594
CIL_0008Z4 CIL_0008Z4_0001 VISTA 14:95131888-95732401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008285 IEA negative regulation of cell proliferation
GO:0016021 IEA integral component of membrane
GO:0031175 IEA neuron projection development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109936 Clmn-201 protein_coding Mus_musculus 0 1286
ENSMUST00000109937 Clmn-202 protein_coding Mus_musculus 0 1286
ENSMUST00000091246 Flcn-005 protein_coding Mus_musculus 0.00006 57
ENSMUST00000148151 Flcn-003 retained_intron Mus_musculus 0.00006 57
ENSMUST00000102697 Flcn-004 protein_coding Mus_musculus 0.00006 57

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