C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166348 USP54 9606 - 10:73497538-73625953 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339859 USP54-014 73497538-73625650 protein_coding
  ENST00000408019 USP54-201 73497540-73575675 protein_coding
  ENST00000413442 USP54-012 73543046-73591342 protein_coding
  ENST00000418501 USP54-006 73497538-73530831 nonsense_mediated_decay
  ENST00000422491 USP54-202 73498367-73526757 protein_coding
  ENST00000424265 USP54-007 73497538-73541702 nonsense_mediated_decay
  ENST00000433394 USP54-011 73571421-73625953 protein_coding
  ENST00000451492 USP54-013 73539538-73591338 protein_coding
  ENST00000461520 USP54-009 73536201-73575658 processed_transcript
  ENST00000464635 USP54-010 73500655-73505196 retained_intron
  ENST00000466048 USP54-008 73497538-73534770 nonsense_mediated_decay
  ENST00000474929 USP54-015 73576205-73625928 processed_transcript
  ENST00000480210 USP54-003 73529541-73530411 processed_transcript
  ENST00000481991 USP54-002 73542835-73546636 processed_transcript
  ENST00000492357 USP54-004 73541429-73541892 processed_transcript
  ENST00000497106 USP54-005 73498295-73553340 processed_transcript
  ENST00000498143 USP54-001 73518722-73576337 retained_intron
  ENST00000498213 USP54-019 73575810-73591540 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMuscleOvaryTestisENST00000408019ENST00000418501ENST00000424265ENST00000497106ENST00000498143ENST00000498213
Transcript ID Brain Breast Heart Liver Lung Muscle Ovary Testis
ENST00000408019 2.606±0.00 N/A 0.675±0.00 N/A 2.680±0.06 N/A N/A 3.794±0.00
ENST00000418501 N/A N/A N/A N/A 6.297±0.00 N/A 4.391±0.00 N/A
ENST00000424265 N/A N/A N/A N/A N/A 6.799±0.00 5.482±0.00 5.639±0.00
ENST00000497106 N/A 3.966±0.00 N/A 3.475±0.00 3.182±0.00 N/A N/A N/A
ENST00000498143 N/A N/A 1.210±0.00 N/A N/A 6.637±0.00 N/A N/A
ENST00000498213 N/A N/A N/A N/A 20.276±0.00 N/A 20.278±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008Z CIL_00008Z_0001 CGP 10:73436428-73625953
CIL_0000Q5 CIL_0000Q5_0002 CGP 10:73497538-73641757

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077749 USP54 (1 of 2) ubiquitin specific peptidase 54 protein_coding Danio_rerio
ENSDARG00000077948 usp54a ubiquitin specific peptidase 54a protein_coding Danio_rerio
ENSMUSG00000034235 Usp54 ubiquitin specific peptidase 54 protein_coding Mus_musculus

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