C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034235 Usp54 10090 - 14:20548912-20618354 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022356 Usp54-001 20548912-20607228 protein_coding
  ENSMUST00000035340 Usp54-201 20548912-20618354 protein_coding
  ENSMUST00000123287 Usp54-004 20577180-20586060 protein_coding
  ENSMUST00000127342 Usp54-002 20583225-20618354 retained_intron
  ENSMUST00000143267 Usp54-003 20581169-20605330 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022356ENSMUST00000035340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022356 2.931±1.51 3.569±1.05 3.137±1.34 6.913±5.22 1.781±0.44 1.692±0.62 1.521±0.41 3.043±0.70 0.676±0.15 6.273±0.47 0.683±0.15 5.532±2.57 1.374±0.45 2.838±1.57
ENSMUST00000035340 0.840±0.47 0.911±0.00 2.433±0.13 2.876±0.01 0.509±0.00 0.551±0.16 N/A 0.898±0.16 0.366±0.22 2.514±0.86 0.607±0.21 2.398±1.91 1.390±0.87 1.923±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008Z CIL_00008Z_0002 CGP 14:20499364-20618354
CIL_0000Q5 CIL_0000Q5_0003 CGP 14:20548912-20656540

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008150 ND biological_process
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077749 USP54 (1 of 2) ubiquitin specific peptidase 54 protein_coding Danio_rerio
ENSDARG00000077948 usp54a ubiquitin specific peptidase 54a protein_coding Danio_rerio
ENSG00000166348 USP54 ubiquitin specific peptidase 54 protein_coding Homo_sapiens

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