C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cellular retinoic acid binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166426 CRABP1 9606 + 15:78340324-78348230 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299529 CRABP1-001 78340324-78348230 protein_coding
  ENST00000406419 CRABP1-002 78340476-78348078 nonsense_mediated_decay
  ENST00000560753 CRABP1-003 78347821-78348221 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000299529ENST00000406419ENST00000560753
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000299529 N/A 0.126±0.00 1.354±0.00 6.335±2.57 4.183±3.60 5.535±0.00 0.120±0.00 4.926±0.00 N/A 0.136±0.00 5.857±7.21 11.531±5.04 0.912±0.45
ENST00000406419 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 0.219±0.00 0.336±0.00 N/A N/A
ENST00000560753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.065±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050O CIL_00050O_0002 CGP 15:78277835-78348230
CIL_00020I CIL_00020I_0001 CGP 15:78340324-78501456

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001972 IEA retinoic acid binding
GO:0005215 IEA transporter activity
GO:0005501 TAS retinoid binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0006810 IEA transport
GO:0007165 TAS signal transduction
GO:0007275 TAS multicellular organismal development
GO:0016918 IEA retinal binding
GO:0019841 IEA retinol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035904 crabp1b cellular retinoic acid binding protein 1b protein_coding Danio_rerio
ENSDARG00000045926 crabp1a cellular retinoic acid binding protein 1a protein_coding Danio_rerio
ENSMUSG00000032291 Crabp1 cellular retinoic acid binding protein I protein_coding Mus_musculus

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