C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATM interactor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166454 ATMIN 9606 + 16:81035847-81047358 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299575 ATMIN-001 81035847-81047358 protein_coding
  ENST00000539819 ATMIN-002 81037182-81045174 processed_transcript
  ENST00000562969 ATMIN-006 81036058-81041711 retained_intron
  ENST00000564241 ATMIN-003 81037187-81047348 protein_coding
  ENST00000565237 ATMIN-005 81037208-81042450 protein_coding
  ENST00000566488 ATMIN-004 81040525-81047346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299575ENST00000539819ENST00000564241ENST00000566488
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299575 8.695±0.00 5.709±0.00 1.610±0.00 11.168±0.13 4.277±2.27 3.699±0.01 4.145±1.16 4.198±1.68 4.592±1.25 2.092±0.37 3.794±0.03 4.748±1.87 11.088±5.04 11.477±0.56
ENST00000539819 N/A N/A 1.068±0.00 N/A N/A 0.984±0.00 N/A N/A N/A 1.179±0.00 1.795±0.73 2.711±1.47 9.079±0.89 16.865±9.59
ENST00000564241 N/A N/A N/A N/A 1.978±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566488 N/A 1.275±0.00 0.559±0.00 1.440±0.00 0.653±0.16 0.411±0.00 N/A 0.859±0.00 N/A 0.963±0.00 N/A 0.516±0.17 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QV CIL_0001QV_0001 CGP 16:81006498-81047358
CIL_0001QN CIL_0001QN_0001 CGP 16:81035847-81077267

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045502 IPI dynein binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068601 atmin ATM interactor protein_coding Danio_rerio
ENSMUSG00000047388 Atmin ATM interactor protein_coding Mus_musculus

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