C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycystic kidney disease 1-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166473 PKD1L2 9606 - 16:81100875-81220370 polymorphic_pseudogene
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299598 PKD1L2-003 81130081-81188998 retained_intron
  ENST00000337114 PKD1L2-201 81170289-81220370 protein_coding
  ENST00000525539 PKD1L2-001 81101123-81220370 polymorphic_pseudogene
  ENST00000526632 PKD1L2-005 81170292-81198786 protein_coding
  ENST00000527937 PKD1L2-007 81171215-81181327 protein_coding
  ENST00000529079 PKD1L2-012 81154130-81159988 retained_intron
  ENST00000529791 PKD1L2-011 81174863-81181327 processed_transcript
  ENST00000530363 PKD1L2-008 81123018-81141499 retained_intron
  ENST00000531391 PKD1L2-006 81170289-81181329 protein_coding
  ENST00000533478 PKD1L2-004 81100889-81181324 polymorphic_pseudogene
  ENST00000534142 PKD1L2-009 81100879-81136372 processed_transcript
  ENST00000534447 PKD1L2-010 81100875-81113981 retained_intron
  ENST00000614230 PKD1L2-202 81100879-81220370 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299598ENST00000337114ENST00000527937ENST00000529791ENST00000530363ENST00000531391ENST00000533478ENST00000534142ENST00000534447
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299598 N/A 0.047±0.00 0.153±0.14 N/A N/A 0.215±0.00 N/A 0.047±0.00 N/A 0.015±0.00 0.095±0.06 0.070±0.00 0.110±0.00
ENST00000337114 N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527937 N/A 0.079±0.00 0.047±0.00 N/A 0.058±0.03 N/A 0.110±0.05 0.095±0.05 N/A 0.056±0.00 0.054±0.04 0.086±0.00 0.145±0.00
ENST00000529791 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.098±0.94 0.816±0.00 N/A N/A
ENST00000530363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A
ENST00000531391 N/A N/A N/A 3.155±0.00 N/A 0.766±0.00 N/A N/A N/A N/A N/A 0.418±0.16 N/A
ENST00000533478 0.201±0.00 N/A N/A 0.634±0.00 0.218±0.00 N/A N/A 0.202±0.00 N/A N/A 0.131±0.10 0.093±0.00 N/A
ENST00000534142 0.219±0.00 N/A N/A N/A 0.246±0.00 0.291±0.00 N/A 0.245±0.00 0.334±0.00 N/A 0.391±0.33 0.214±0.04 0.243±0.00
ENST00000534447 0.149±0.00 0.174±0.00 0.368±0.00 0.250±0.11 0.214±0.00 0.185±0.00 0.165±0.00 0.089±0.00 0.154±0.00 0.064±0.00 0.088±0.02 0.057±0.01 0.237±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043F CIL_00043F_0001 CGP 16:81081961-81181213

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006811 IEA ion transport
GO:0007218 IEA neuropeptide signaling pathway
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0055085 IEA transmembrane transport

Homologs

No Homologs available.

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