C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 3, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166509 CLEC3A 9606 + 16:78022515-78066761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299642 CLEC3A-001 78022515-78032106 protein_coding
  ENST00000565808 CLEC3A-003 78029089-78030951 processed_transcript
  ENST00000567430 CLEC3A-002 78022515-78066761 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299642ENST00000565808ENST00000567430
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299642 N/A N/A 0.032±0.00 0.187±0.00 N/A N/A 0.026±0.00 2.545±0.00 0.381±0.00 N/A N/A 0.017±0.00 0.024±0.00
ENST00000565808 N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A 0.157±0.00 N/A N/A
ENST00000567430 0.082±0.00 0.587±0.00 0.251±0.00 0.194±0.00 0.099±0.00 0.154±0.00 0.215±0.00 0.072±0.00 0.392±0.00 0.238±0.00 0.114±0.00 N/A 0.343±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YB CIL_0004YB_0002 CGP 16:77788530-78066761
CIL_0008I7 CIL_0008I7_0001 VISTA 16:77875854-78477465
CIL_0003OH CIL_0003OH_0001 CGP 16:78022515-79212667

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005576 IEA extracellular region
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060017 CLEC3A C-type lectin domain family 3, member A protein_coding Danio_rerio
ENSMUSG00000008874 Clec3a C-type lectin domain family 3, member a protein_coding Mus_musculus

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