C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008I7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs15 VISTA 9606 16:77875854-78477465
GeneTranscriptPositionBiotype
ENSG00000166509 (CLEC3A)
C-type lectin domain family 3, member A 		ENST00000299642 (CLEC3A-001) 78022515-78032106 protein_coding
ENST00000565808 (CLEC3A-003) 78029089-78030951 processed_transcript
ENST00000567430 (CLEC3A-002) 78022515-78066761 nonsense_mediated_decay
ENSG00000171724 (VAT1L)
vesicle amine transport 1-like 		ENST00000302536 (VAT1L-001) 77788530-77980107 protein_coding
ENST00000563850 (VAT1L-002) 77862748-77882408 processed_transcript
ENSG00000186153 (WWOX)
WW domain containing oxidoreductase 		ENST00000355860 (WWOX-001) 78099679-78278696 protein_coding
ENST00000402655 (WWOX-003) 78099654-79212667 protein_coding
ENST00000406884 (WWOX-004) 78099654-79212667 protein_coding
ENST00000408984 (WWOX-006) 78099694-78780449 protein_coding
ENST00000539474 (WWOX-016) 78099654-79212667 protein_coding
ENST00000561846 (WWOX-015) 78099735-78281049 processed_transcript
ENST00000562214 (WWOX-008) 78099656-78119076 processed_transcript
ENST00000562639 (WWOX-013) 78130049-78432603 processed_transcript
ENST00000563358 (WWOX-011) 78099786-78278703 processed_transcript
ENST00000565562 (WWOX-010) 78099734-78111992 processed_transcript
ENST00000565791 (WWOX-012) 78145917-78270586 processed_transcript
ENST00000566103 (WWOX-014) 79196359-79212300 processed_transcript
ENST00000566662 (WWOX-009) 78099656-78424956 nonsense_mediated_decay
ENST00000566780 (WWOX-005) 78099413-79212667 protein_coding
ENST00000569332 (WWOX-002) 78099626-79212319 nonsense_mediated_decay
ENST00000569818 (WWOX-007) 78099675-78100199 protein_coding
ENST00000620008 (WWOX-201) 78424871-78432752 protein_coding
ENSG00000260014 (LSM3P5)
LSM3 pseudogene 5 		ENST00000566307 (LSM3P5-001) 78355529-78355834 processed_pseudogene
ENSG00000260731 (KRT8P22)
keratin 8 pseudogene 22 		ENST00000562317 (KRT8P22-001) 78048483-78049897 processed_pseudogene
ENSG00000260969 (RP11-190D6.2)
 ENST00000567099 (RP11-190D6.2-001) 78237362-78241218 antisense
ENSG00000261330 (RP11-281J9.1)
 ENST00000567559 (RP11-281J9.1-001) 77892422-77892915 processed_pseudogene
ENSG00000261540 (RP11-281J9.2)
 ENST00000563114 (RP11-281J9.2-001) 78014683-78059454 antisense
ENSG00000261776 (RP11-358L22.2)
 ENST00000567157 (RP11-358L22.2-001) 78055824-78056927 processed_pseudogene
ENSG00000276007 (RP11-358L22.3)
 ENST00000612986 (RP11-358L22.3-001) 78123243-78124332 sense_intronic
ENSG00000279991 (RP11-190D6.1)
 ENST00000624577 (RP11-190D6.1-001) 78166717-78168514 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008I7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs15 VISTA 10090 8:114199211-114800511
GeneTranscriptPositionBiotype
ENSMUSG00000004637 (Wwox)
WW domain-containing oxidoreductase 		ENSMUST00000004756 (Wwox-001) 114439655-115352708 protein_coding
ENSMUST00000109107 (Wwox-002) 114439702-114474529 protein_coding
ENSMUST00000109108 (Wwox-004) 114439695-114875238 protein_coding
ENSMUST00000159870 (Wwox-007) 114712167-115019702 processed_transcript
ENSMUST00000160005 (Wwox-005) 114439702-114453818 processed_transcript
ENSMUST00000160205 (Wwox-008) 114608436-114706324 processed_transcript
ENSMUST00000160862 (Wwox-003) 114439695-114718679 protein_coding
ENSMUST00000161753 (Wwox-009) 114448210-114514288 processed_transcript
ENSMUST00000162052 (Wwox-006) 114712167-115352143 processed_transcript
ENSMUSG00000008874 (Clec3a)
C-type lectin domain family 3, member a 		ENSMUST00000009018 (Clec3a-001) 114418086-114425846 protein_coding
ENSMUSG00000046844 (Vat1l)
vesicle amine transport protein 1 homolog-like (T. californica) 		ENSMUST00000049509 (Vat1l-001) 114205630-114374071 protein_coding
ENSMUST00000124143 (Vat1l-004) 114368116-114374070 retained_intron
ENSMUST00000142591 (Vat1l-003) 114205612-114230325 processed_transcript
ENSMUST00000150963 (Vat1l-002) 114205634-114230319 protein_coding
ENSMUSG00000084848 (4933408N05Rik)
RIKEN cDNA 4933408N05 gene 		ENSMUST00000139864 (4933408N05Rik-001) 114341160-114351479 antisense
ENSMUSG00000089723 (Gm16117)
predicted gene 16117 		ENSMUST00000160544 (Gm16117-001) 114639546-114642114 antisense
ENSMUSG00000089797 (Gm16118)
predicted gene 16118 		ENSMUST00000161914 (Gm16118-001) 114698439-114708006 antisense
ENSMUSG00000090217 (Gm16116)
predicted gene 16116 		ENSMUST00000159472 (Gm16116-001) 114591303-114594900 antisense

Mus musculus Ensembl (GRCm38)

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Genes
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166509 ENST00000299642 N/A N/A N/A 0.032±0.00 0.187±0.00 N/A N/A 0.026±0.00 2.545±0.00 0.381±0.00 N/A N/A 0.017±0.00 0.024±0.00
ENST00000565808 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A 0.157±0.00 N/A N/A
ENST00000567430 0.082±0.00 0.587±0.00 N/A 0.251±0.00 0.194±0.00 0.099±0.00 0.154±0.00 0.215±0.00 0.072±0.00 0.392±0.00 0.238±0.00 0.114±0.00 N/A 0.343±0.00
ENSG00000171724 ENST00000302536 0.210±0.00 0.162±0.00 0.488±0.00 9.088±3.17 0.372±0.25 2.298±1.37 4.246±2.76 1.697±1.68 0.409±0.39 0.415±0.00 0.404±0.00 0.278±0.13 1.206±0.86 2.096±0.13
ENST00000563850 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A
ENSG00000186153 ENST00000355860 N/A N/A N/A 1.081±0.00 N/A N/A N/A 2.863±0.00 1.738±0.00 1.210±0.00 N/A 1.407±0.00 N/A N/A
ENST00000402655 N/A N/A N/A N/A 0.926±0.00 N/A 0.198±0.00 0.337±0.00 0.681±0.00 N/A 1.828±0.00 1.498±0.57 1.622±0.36 1.921±0.00
ENST00000406884 0.821±0.00 N/A N/A 6.044±0.00 3.890±0.00 1.270±0.00 0.778±0.00 0.711±0.35 2.148±0.00 1.181±0.66 N/A 2.586±0.58 1.535±0.68 1.312±0.00
ENST00000408984 N/A N/A 1.586±0.00 N/A N/A N/A N/A N/A 1.016±0.00 N/A N/A N/A 1.000±0.00 N/A
ENST00000539474 N/A 2.265±0.00 N/A N/A N/A N/A N/A 1.373±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561846 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.320±0.00 N/A N/A N/A N/A
ENST00000562214 N/A N/A N/A 2.346±0.00 3.031±0.00 1.141±0.00 0.878±0.00 N/A 1.173±0.00 N/A 0.820±0.00 1.391±0.00 N/A 5.732±0.00
ENST00000562639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565562 3.468±0.00 3.653±0.00 N/A N/A 1.271±0.00 1.959±1.06 1.669±0.00 N/A N/A N/A 0.494±0.00 N/A N/A 6.279±0.00
ENST00000565791 N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566103 N/A N/A N/A N/A N/A N/A N/A N/A 1.724±0.00 N/A N/A N/A N/A N/A
ENST00000566662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566780 0.780±0.00 N/A N/A 3.952±0.00 N/A 0.588±0.00 0.536±0.00 2.133±0.00 N/A 1.020±0.00 N/A 2.656±1.46 0.878±0.10 3.231±0.39
ENST00000569332 1.628±0.00 2.013±0.00 N/A 3.036±0.00 2.133±0.00 0.686±0.00 N/A 1.133±0.00 N/A 3.642±0.00 N/A N/A N/A 1.793±0.00
ENST00000569818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.819±0.00 6.825±0.00 21.219±0.00
ENST00000620008 N/A N/A N/A N/A N/A N/A N/A N/A 3.609±0.00 N/A 2.101±0.00 2.523±0.00 3.840±1.08 N/A
ENSG00000260014 ENST00000566307 N/A N/A 0.313±0.00 N/A 0.194±0.03 N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 0.452±0.00
ENSG00000260731 ENST00000562317 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 0.061±0.00
ENSG00000260969 ENST00000567099 N/A N/A 0.189±0.00 N/A N/A N/A N/A 0.073±0.00 0.032±0.00 N/A N/A 1.823±0.00 N/A 1.908±0.00
ENSG00000261330 ENST00000567559 0.082±0.00 0.254±0.00 0.885±0.00 0.178±0.00 0.057±0.00 0.232±0.00 N/A 0.056±0.00 N/A 0.104±0.00 0.320±0.00 N/A N/A 1.088±0.00
ENSG00000261540 ENST00000563114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00
ENSG00000261776 ENST00000567157 0.031±0.00 0.165±0.00 N/A 0.018±0.00 0.087±0.00 0.016±0.00 0.031±0.00 0.095±0.06 0.030±0.00 N/A 0.146±0.00 N/A N/A 0.093±0.00
ENSG00000276007 ENST00000612986 0.325±0.00 0.975±0.00 0.374±0.00 1.394±0.35 0.391±0.31 0.598±0.45 0.109±0.07 0.536±0.00 1.000±0.87 0.388±0.13 0.112±0.00 0.846±0.42 0.141±0.11 1.346±0.56
ENSG00000279991 ENST00000624577 N/A N/A 0.658±0.00 0.133±0.11 0.082±0.00 0.354±0.00 0.094±0.00 0.063±0.03 0.092±0.00 0.267±0.00 N/A 0.005±0.00 0.011±0.00 0.055±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004637 ENSMUST00000004756 4.897±1.21 6.061±5.19 3.146±0.05 2.591±0.50 3.734±1.38 3.387±1.43 1.025±0.25 7.261±1.56 1.391±0.33 4.627±1.38 1.196±0.09 6.961±2.38 1.301±0.64 6.228±0.24
ENSMUST00000109107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109108 N/A N/A N/A N/A 1.412±0.00 1.323±0.22 N/A 1.391±0.00 0.722±0.27 N/A N/A 2.471±0.39 0.623±0.07 N/A
ENSMUST00000159870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160005 0.781±0.13 N/A 0.644±0.03 0.673±0.00 0.945±0.32 1.321±0.00 0.461±0.04 N/A 0.511±0.12 1.122±0.21 0.754±0.09 2.087±0.65 0.498±0.22 2.669±0.13
ENSMUST00000160205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160862 1.204±0.03 N/A N/A N/A 1.731±0.75 N/A 0.734±0.30 1.866±0.00 0.940±0.35 1.173±0.00 N/A 2.594±0.23 N/A N/A
ENSMUST00000161753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162052 N/A 14.488±2.42 N/A 10.252±0.00 3.351±0.06 3.667±0.93 N/A 4.225±0.00 N/A N/A N/A 9.221±2.80 4.110±1.21 52.883±0.00
ENSMUSG00000008874 ENSMUST00000009018 N/A N/A N/A N/A N/A N/A 1.026±0.56 N/A N/A N/A 0.199±0.10 N/A 0.054±0.02 0.467±0.11
ENSMUSG00000046844 ENSMUST00000049509 0.455±0.09 2.513±0.43 0.426±0.06 22.276±2.71 2.560±0.93 1.147±0.03 0.480±0.16 0.541±0.09 0.026±0.01 0.350±0.13 0.351±0.16 0.064±0.06 0.079±0.03 0.184±0.10
ENSMUST00000124143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.014±0.00
ENSMUST00000142591 N/A N/A N/A N/A N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A 0.216±0.00 N/A
ENSMUST00000150963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.00 N/A N/A N/A
ENSMUSG00000084848 ENSMUST00000139864 N/A N/A N/A 0.110±0.00 0.036±0.01 N/A N/A 0.048±0.02 0.006±0.00 N/A N/A 0.138±0.10 0.135±0.21 2.234±0.81
ENSMUSG00000089723 ENSMUST00000160544 0.288±0.00 N/A 0.156±0.11 N/A N/A N/A N/A N/A N/A N/A 0.194±0.08 N/A N/A N/A
ENSMUSG00000089797 ENSMUST00000161914 0.634±0.18 0.278±0.11 0.751±0.12 0.094±0.00 1.730±1.09 0.393±0.15 0.057±0.00 0.292±0.15 0.083±0.03 1.099±0.30 3.858±0.88 1.327±0.54 0.067±0.03 0.232±0.15
ENSMUSG00000090217 ENSMUST00000159472 0.231±0.08 0.161±0.00 0.355±0.00 N/A 0.346±0.09 0.192±0.00 0.154±0.06 0.108±0.01 0.451±0.23 0.242±0.08 N/A 0.514±0.27 0.171±0.07 0.165±0.06

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