C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin D-type binding-protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166946 CCNDBP1 9606 + 15:43185118-43197176 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300213 CCNDBP1-001 43185257-43197176 protein_coding
  ENST00000444658 CCNDBP1-017 43185940-43195192 retained_intron
  ENST00000562553 CCNDBP1-014 43185446-43191675 nonsense_mediated_decay
  ENST00000563065 CCNDBP1-003 43185406-43195195 nonsense_mediated_decay
  ENST00000564630 CCNDBP1-005 43185118-43193306 retained_intron
  ENST00000565296 CCNDBP1-010 43185439-43195195 nonsense_mediated_decay
  ENST00000565958 CCNDBP1-016 43194184-43195198 retained_intron
  ENST00000566515 CCNDBP1-009 43185328-43195164 nonsense_mediated_decay
  ENST00000566833 CCNDBP1-012 43185439-43189466 retained_intron
  ENST00000566882 CCNDBP1-007 43188452-43193356 retained_intron
  ENST00000567434 CCNDBP1-013 43185409-43191675 nonsense_mediated_decay
  ENST00000567690 CCNDBP1-015 43185920-43194461 retained_intron
  ENST00000568507 CCNDBP1-006 43185439-43195180 nonsense_mediated_decay
  ENST00000568936 CCNDBP1-008 43189262-43193335 retained_intron
  ENST00000569745 CCNDBP1-002 43185405-43195160 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300213ENST00000444658ENST00000563065ENST00000564630ENST00000565958ENST00000566515ENST00000567434ENST00000567690ENST00000568507ENST00000569745
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300213 3.933±0.00 2.688±0.00 N/A 1.913±0.00 2.988±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444658 N/A N/A 1.866±0.00 6.978±0.78 5.058±0.00 N/A N/A N/A 11.441±0.00 10.050±0.00 1.975±0.00 6.451±0.05 14.794±4.28 N/A
ENST00000563065 N/A 9.012±0.00 N/A 6.853±0.00 12.615±0.00 14.459±0.00 6.146±1.66 7.466±3.80 4.014±0.00 7.570±0.00 7.626±2.46 7.161±0.63 25.322±3.67 13.528±0.00
ENST00000564630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.538±0.00 N/A N/A N/A
ENST00000565958 N/A N/A 7.090±0.00 17.411±0.00 12.610±0.00 14.703±0.00 N/A N/A N/A N/A 9.155±0.00 N/A N/A N/A
ENST00000566515 N/A N/A 1.754±0.00 4.239±0.00 N/A 4.588±0.00 3.274±0.00 9.336±0.00 2.895±0.00 7.872±0.00 N/A 4.281±0.00 21.252±3.43 N/A
ENST00000567434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.532±0.00 39.229±0.00 17.971±0.00
ENST00000567690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.394±0.00
ENST00000568507 12.532±0.00 9.898±0.00 N/A 8.685±0.00 8.967±0.00 13.776±0.00 7.387±0.00 N/A 3.693±0.00 10.988±0.00 5.284±0.00 5.879±0.00 19.647±4.06 8.383±1.15
ENST00000569745 16.049±0.00 8.798±0.00 N/A N/A N/A N/A 4.350±0.00 7.228±0.00 N/A 8.648±0.00 N/A 7.556±1.64 19.641±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YC CIL_0005YC_0001 CGP 15:43123279-43197176

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0007049 IEA cell cycle
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039328 CCNDBP1 cyclin D-type binding-protein 1 protein_coding Danio_rerio
ENSMUSG00000023572 Ccndbp1 cyclin D-type binding-protein 1 protein_coding Mus_musculus

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