C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lipoxygenase homology domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167210 LOXHD1 9606 - 18:46476972-46657033 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300591 LOXHD1-002 46476972-46559312 protein_coding
  ENST00000335730 LOXHD1-001 46509567-46601663 retained_intron
  ENST00000398686 LOXHD1-008 46477273-46519086 protein_coding
  ENST00000398705 LOXHD1-007 46476973-46519071 protein_coding
  ENST00000414184 LOXHD1-010 46505892-46520698 protein_coding
  ENST00000419859 LOXHD1-005 46547007-46559289 protein_coding
  ENST00000441551 LOXHD1-013 46477450-46657033 protein_coding
  ENST00000452425 LOXHD1-009 46509812-46520725 protein_coding
  ENST00000536111 LOXHD1-006 46529300-46555371 nonsense_mediated_decay
  ENST00000536736 LOXHD1-201 46477260-46657033 protein_coding
  ENST00000579038 LOXHD1-015 46476973-46556769 protein_coding
  ENST00000582408 LOXHD1-014 46477260-46559292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300591ENST00000335730ENST00000398686ENST00000398705ENST00000414184ENST00000441551ENST00000536111ENST00000579038ENST00000582408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 0.018±0.00 0.970±0.00
ENST00000335730 0.353±0.00 N/A N/A 0.043±0.00 0.145±0.00 N/A 0.029±0.01 0.056±0.00 0.026±0.02 0.265±0.00 N/A 0.042±0.02 0.071±0.00 N/A
ENST00000398686 N/A 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.12 N/A 4.409±1.97
ENST00000398705 N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 5.846±3.42
ENST00000414184 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A 0.132±0.00 0.053±0.00 N/A 15.933±0.00
ENST00000441551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 0.051±0.00 N/A
ENST00000536111 N/A N/A 0.475±0.00 N/A N/A 0.061±0.00 N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A
ENST00000579038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A
ENST00000582408 N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A 0.130±0.05 1.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B1 CIL_0000B1_0002 CGP 18:46326809-46657033

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005262 IBA calcium channel activity
GO:0005515 IEA protein binding
GO:0007605 IMP sensory perception of sound
GO:0016020 IBA membrane
GO:0032420 ISS stereocilium
GO:0050982 IBA detection of mechanical stimulus
GO:0070588 IBA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074638 loxhd1b lipoxygenase homology domains 1b protein_coding Danio_rerio
ENSDARG00000094738 loxhd1a lipoxygenase homology domains 1a protein_coding Danio_rerio
ENSMUSG00000032818 Loxhd1 lipoxygenase homology domains 1 protein_coding Mus_musculus

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