C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin VB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167306 MYO5B 9606 - 18:49822813-50195093 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285039 MYO5B-001 49822813-50195093 protein_coding
  ENST00000324581 MYO5B-006 49826260-49902833 protein_coding
  ENST00000585859 MYO5B-008 49879021-49880496 retained_intron
  ENST00000586036 MYO5B-005 50040252-50097620 processed_transcript
  ENST00000587895 MYO5B-009 49863262-49876283 processed_transcript
  ENST00000589568 MYO5B-010 49877799-49879421 retained_intron
  ENST00000592688 MYO5B-002 49826290-49849846 protein_coding
  ENST00000616031 MYO5B-201 49826259-50097618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLungOvaryPlacentaTestisENST00000285039ENST00000324581ENST00000616031
Transcript ID Bladder Brain Colon Kidney Lung Ovary Placenta Testis
ENST00000285039 N/A 0.552±0.09 5.542±0.00 5.068±0.00 1.882±0.09 1.477±0.82 0.704±0.02 0.977±0.00
ENST00000324581 3.163±0.00 N/A N/A N/A 4.906±0.00 28.329±0.00 4.351±2.25 8.143±3.05
ENST00000616031 4.424±0.00 N/A N/A N/A 3.036±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B5 CIL_0000B5_0002 CGP 18:49822813-50266522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000146 TAS microfilament motor activity
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0006833 TAS water transport
GO:0008152 IEA metabolic process
GO:0015031 IEA protein transport
GO:0016192 IMP vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0017137 IPI Rab GTPase binding
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0032439 IMP endosome localization
GO:0043234 IDA protein complex
GO:0045179 IDA apical cortex
GO:0055037 IC recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062003 myo5b myosin VB protein_coding Danio_rerio
ENSDARG00000093553 myo5b myosin VB protein_coding Danio_rerio
ENSMUSG00000025885 Myo5b myosin VB protein_coding Mus_musculus

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