C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin VB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025885 Myo5b 10090 + 18:74440936-74771493 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074157 Myo5b-001 74442537-74771493 protein_coding
  ENSMUST00000120161 Myo5b-003 74442605-74659060 processed_transcript
  ENSMUST00000121875 Myo5b-002 74442607-74770805 protein_coding
  ENSMUST00000122914 Myo5b-010 74714789-74717066 retained_intron
  ENSMUST00000125751 Myo5b-007 74633177-74644023 processed_transcript
  ENSMUST00000125882 Myo5b-005 74440936-74617023 protein_coding
  ENSMUST00000135878 Myo5b-006 74440964-74512195 processed_transcript
  ENSMUST00000140904 Myo5b-008 74707506-74717075 processed_transcript
  ENSMUST00000146253 Myo5b-009 74715578-74722455 processed_transcript
  ENSMUST00000154986 Myo5b-004 74733765-74771477 retained_intron
  ENSMUST00000177366 Myo5b-011 74713619-74717068 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074157ENSMUST00000121875ENSMUST00000125751ENSMUST00000125882ENSMUST00000146253ENSMUST00000154986
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074157 0.443±0.33 N/A 1.927±0.00 0.326±0.00 0.430±0.24 11.475±3.19 0.997±0.23 8.519±1.48 0.743±0.32 4.694±2.75 0.059±0.02 2.017±0.72 1.950±0.91 3.280±0.07
ENSMUST00000121875 1.183±0.01 0.861±0.28 2.792±0.09 3.463±4.57 0.551±0.18 7.946±1.52 1.877±0.10 9.966±3.02 1.103±0.55 4.111±0.61 0.132±0.02 2.102±0.63 3.328±1.85 8.442±1.94
ENSMUST00000125751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A
ENSMUST00000125882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A
ENSMUST00000146253 N/A N/A N/A 137.063±0.00 N/A N/A N/A N/A N/A N/A N/A 50.699±0.00 52.773±11.64 258.087±0.00
ENSMUST00000154986 1.054±0.12 0.964±0.00 3.775±1.84 2.567±3.00 1.205±0.44 11.083±0.00 2.510±0.55 11.442±1.27 1.473±0.61 N/A 0.067±0.03 2.935±0.63 2.193±0.46 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001F3 CIL_0001F3_0002 CGP 18:74283090-74771493

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005524 IEA ATP binding
GO:0008152 IEA metabolic process
GO:0016192 IEA vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0017137 IEA Rab GTPase binding
GO:0032439 IEA endosome localization
GO:0043234 IEA protein complex
GO:0045179 IEA apical cortex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062003 myo5b myosin VB protein_coding Danio_rerio
ENSDARG00000093553 myo5b myosin VB protein_coding Danio_rerio
ENSG00000167306 MYO5B myosin VB protein_coding Homo_sapiens

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