C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB4B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167578 RAB4B 9606 + 19:40778216-40796944 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357052 RAB4B-201 40778219-40796944 protein_coding
  ENST00000378307 RAB4B-008 40778309-40796890 nonsense_mediated_decay
  ENST00000594800 RAB4B-001 40778216-40792572 protein_coding
  ENST00000595728 RAB4B-006 40780385-40796942 protein_coding
  ENST00000597476 RAB4B-007 40779047-40796938 retained_intron
  ENST00000598430 RAB4B-005 40785533-40796938 retained_intron
  ENST00000600078 RAB4B-002 40778274-40783973 retained_intron
  ENST00000602069 RAB4B-009 40778250-40786760 processed_transcript
  ENST00000602173 RAB4B-003 40778378-40786978 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverMuscleOvaryPlacentaENST00000357052ENST00000595728ENST00000597476
Transcript ID Bladder Brain Kidney Liver Muscle Ovary Placenta
ENST00000357052 N/A 35.961±0.00 N/A N/A 5.601±0.00 40.742±0.00 19.150±1.15
ENST00000595728 N/A 7.627±0.00 34.147±0.00 15.807±0.00 3.380±2.06 26.174±0.00 33.039±3.96
ENST00000597476 0.796±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NO CIL_0000NO_0001 CGP 19:40771648-40786685

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032593 IDA insulin-responsive compartment
GO:0046323 IMP glucose import
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012177 rab4b RAB4B, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000053291 Rab4b RAB4B, member RAS oncogene family protein_coding Mus_musculus

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