C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000261857-ENSG00000268975 CGP 9606 19:40771648-40786685
GeneTranscriptPositionBiotype
ENSG00000167578 (RAB4B)
RAB4B, member RAS oncogene family 		ENST00000357052 (RAB4B-201) 40778219-40796944 protein_coding
ENST00000378307 (RAB4B-008) 40778309-40796890 nonsense_mediated_decay
ENST00000594800 (RAB4B-001) 40778216-40792572 protein_coding
ENST00000595728 (RAB4B-006) 40780385-40796942 protein_coding
ENST00000597476 (RAB4B-007) 40779047-40796938 retained_intron
ENST00000598430 (RAB4B-005) 40785533-40796938 retained_intron
ENST00000600078 (RAB4B-002) 40778274-40783973 retained_intron
ENST00000602069 (RAB4B-009) 40778250-40786760 processed_transcript
ENST00000602173 (RAB4B-003) 40778378-40786978 protein_coding
ENSG00000171570 (RAB4B-EGLN2)
RAB4B-EGLN2 readthrough (NMD candidate) 		ENST00000594136 (RAB4B-EGLN2-003) 40778271-40808198 nonsense_mediated_decay
ENST00000596216 (RAB4B-EGLN2-002) 40780379-40800396 retained_intron
ENST00000601949 (RAB4B-EGLN2-001) 40778242-40800443 processed_transcript
CIL_0000NO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000095538-ENSMUSG00000089661 CGP 10090 7:27168430-27181157
GeneTranscriptPositionBiotype
ENSMUSG00000053291 (Rab4b)
RAB4B, member RAS oncogene family 		ENSMUST00000093040 (Rab4b-001) 27168424-27178896 protein_coding
ENSMUST00000128409 (Rab4b-005) 27175797-27178876 processed_transcript
ENSMUST00000131278 (Rab4b-008) 27172399-27174512 processed_transcript
ENSMUST00000131420 (Rab4b-004) 27172710-27174459 processed_transcript
ENSMUST00000134462 (Rab4b-002) 27168427-27178815 retained_intron
ENSMUST00000141906 (Rab4b-007) 27175828-27178823 processed_transcript
ENSMUST00000152753 (Rab4b-006) 27168695-27178888 processed_transcript
ENSMUST00000153511 (Rab4b-003) 27168426-27178810 nonsense_mediated_decay
ENSMUSG00000095538 (Gm21983)
predicted gene 21983 		ENSMUST00000154724 (Gm21983-001) 27168430-27181086 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NO_0001ENSG00000167578ENST00000357052ENST00000378307ENST00000594800ENST00000595728ENST00000597476ENST00000598430ENST00000600078ENST00000602069ENST00000602173ENSG00000171570ENST00000594136ENST00000596216ENST00000601949CIL_0000NO_0002ENSMUSG00000053291ENSMUST00000093040ENSMUST00000128409ENSMUST00000131278ENSMUST00000131420ENSMUST00000134462ENSMUST00000141906ENSMUST00000152753ENSMUST00000153511ENSMUSG00000095538ENSMUST00000154724
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NO_0001ENSG00000167578ENST00000357052ENST00000595728ENST00000597476ENSG00000171570ENST00000594136CIL_0000NO_0002ENSMUSG00000053291ENSMUST00000093040ENSMUST00000134462ENSMUST00000152753ENSMUST00000153511ENSMUSG00000095538ENSMUST00000154724
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167578 ENST00000357052 N/A N/A N/A 35.961±0.00 N/A N/A N/A N/A N/A N/A 5.601±0.00 40.742±0.00 19.150±1.15 N/A
ENST00000378307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595728 N/A N/A N/A 7.627±0.00 N/A N/A N/A 34.147±0.00 15.807±0.00 N/A 3.380±2.06 26.174±0.00 33.039±3.96 N/A
ENST00000597476 N/A N/A 0.796±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171570 ENST00000594136 9.926±0.00 N/A N/A N/A 12.754±0.00 9.388±0.00 N/A N/A N/A N/A N/A 8.128±0.00 9.058±0.70 N/A
ENST00000596216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000053291 ENSMUST00000093040 27.321±2.87 40.777±9.54 25.309±4.16 21.400±4.58 31.767±13.90 35.507±6.64 8.149±1.54 22.114±3.43 12.464±1.84 29.682±4.72 3.148±0.87 29.675±8.06 11.253±3.75 32.034±1.76
ENSMUST00000128409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134462 5.364±0.41 N/A 8.228±2.22 4.639±0.99 4.792±1.88 6.704±0.78 1.658±0.00 3.802±0.16 2.231±0.23 5.491±0.50 1.274±0.45 8.099±1.31 2.487±0.57 N/A
ENSMUST00000141906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152753 N/A 12.108±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.817±0.46 N/A N/A
ENSMUST00000153511 N/A N/A N/A 69.053±0.00 N/A N/A N/A N/A N/A N/A N/A 29.249±0.00 22.914±2.36 25.299±0.00
ENSMUSG00000095538 ENSMUST00000154724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.322±0.00 N/A N/A N/A

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