C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromatin assembly factor 1, subunit A (p150)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167670 CHAF1A 9606 + 19:4402662-4445018 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301280 CHAF1A-001 4402662-4443392 protein_coding
  ENST00000585371 CHAF1A-007 4418029-4429516 nonsense_mediated_decay
  ENST00000585854 CHAF1A-004 4402717-4409303 protein_coding
  ENST00000587368 CHAF1A-009 4431055-4433317 processed_transcript
  ENST00000587580 CHAF1A-006 4402702-4409207 processed_transcript
  ENST00000587739 CHAF1A-005 4409445-4428863 protein_coding
  ENST00000589648 CHAF1A-008 4442254-4445018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverMuscleOvaryPlacentaTestisENST00000301280
Transcript ID Adrenal Bladder Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENST00000301280 9.611±0.00 0.505±0.00 4.770±0.00 3.195±2.23 0.670±0.00 0.743±0.00 8.260±0.00 2.670±1.69 5.834±1.13 12.065±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00036Q CIL_00036Q_0001 CGP 19:4360370-4445018
CIL_0001RW CIL_0001RW_0001 CGP 19:4402662-4457822

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003682 TAS chromatin binding
GO:0005515 IPI protein binding
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006335 IDA DNA replication-dependent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006461 TAS protein complex assembly
GO:0007049 IEA cell cycle
GO:0031497 IDA chromatin assembly
GO:0033186 IDA CAF-1 complex
GO:0042802 IPI identical protein binding
GO:0043234 IDA protein complex
GO:0051082 TAS unfolded protein binding
GO:0070087 IPI chromo shadow domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062152 chaf1a chromatin assembly factor 1, subunit A (p150) protein_coding Danio_rerio
ENSMUSG00000002835 Chaf1a chromatin assembly factor 1, subunit A (p150) protein_coding Mus_musculus

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