C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167670-ENSG00000167671 CGP 9606 19:4402662-4457822
GeneTranscriptPositionBiotype
ENSG00000167670 (CHAF1A)
chromatin assembly factor 1, subunit A (p150) 		ENST00000301280 (CHAF1A-001) 4402662-4443392 protein_coding
ENST00000585371 (CHAF1A-007) 4418029-4429516 nonsense_mediated_decay
ENST00000585854 (CHAF1A-004) 4402717-4409303 protein_coding
ENST00000587368 (CHAF1A-009) 4431055-4433317 processed_transcript
ENST00000587580 (CHAF1A-006) 4402702-4409207 processed_transcript
ENST00000587739 (CHAF1A-005) 4409445-4428863 protein_coding
ENST00000589648 (CHAF1A-008) 4442254-4445018 protein_coding
ENSG00000167671 (UBXN6)
UBX domain protein 6 		ENST00000301281 (UBXN6-002) 4445006-4457822 protein_coding
ENST00000394765 (UBXN6-001) 4445010-4455298 protein_coding
ENST00000587009 (UBXN6-004) 4445010-4448116 retained_intron
ENST00000587324 (UBXN6-009) 4445476-4446698 retained_intron
ENST00000588238 (UBXN6-005) 4445007-4449604 retained_intron
ENST00000590466 (UBXN6-006) 4445091-4446620 protein_coding
ENST00000591919 (UBXN6-003) 4444999-4454093 protein_coding
ENST00000592358 (UBXN6-007) 4447839-4452412 retained_intron
ENST00000592515 (UBXN6-010) 4448396-4455438 protein_coding
ENST00000593024 (UBXN6-008) 4447550-4448870 retained_intron
CIL_0001RW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002835-ENSMUSG00000019578 CGP 10090 17:56040416-56075028
GeneTranscriptPositionBiotype
ENSMUSG00000002835 (Chaf1a)
chromatin assembly factor 1, subunit A (p150) 		ENSMUST00000002914 (Chaf1a-201) 56040416-56068026 protein_coding
ENSMUSG00000019578 (Ubxn6)
UBX domain protein 6 		ENSMUST00000019722 (Ubxn6-001) 56067045-56075028 protein_coding
ENSMUST00000132804 (Ubxn6-003) 56068250-56072232 retained_intron
ENSMUST00000134441 (Ubxn6-007) 56068536-56069434 retained_intron
ENSMUST00000139371 (Ubxn6-004) 56070644-56074547 protein_coding
ENSMUST00000146467 (Ubxn6-005) 56070118-56074848 retained_intron
ENSMUST00000151943 (Ubxn6-002) 56068250-56075017 retained_intron
ENSMUST00000153947 (Ubxn6-006) 56069638-56072440 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RW_0001ENSG00000167670ENST00000301280ENST00000585371ENST00000585854ENST00000587368ENST00000587580ENST00000587739ENST00000589648ENSG00000167671ENST00000301281ENST00000394765ENST00000587009ENST00000587324ENST00000588238ENST00000590466ENST00000591919ENST00000592358ENST00000592515ENST00000593024CIL_0001RW_0002ENSMUSG00000002835ENSMUST00000002914ENSMUSG00000019578ENSMUST00000019722ENSMUST00000132804ENSMUST00000134441ENSMUST00000139371ENSMUST00000146467ENSMUST00000151943ENSMUST00000153947
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RW_0001ENSG00000167670ENST00000301280ENSG00000167671ENST00000301281ENST00000394765ENST00000587324ENST00000591919CIL_0001RW_0002ENSMUSG00000002835ENSMUST00000002914ENSMUSG00000019578ENSMUST00000019722ENSMUST00000132804ENSMUST00000139371ENSMUST00000151943
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167670 ENST00000301280 N/A 9.611±0.00 0.505±0.00 4.770±0.00 3.195±2.23 0.670±0.00 N/A N/A 0.743±0.00 N/A 8.260±0.00 2.670±1.69 5.834±1.13 12.065±1.11
ENST00000585371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167671 ENST00000301281 69.064±0.00 55.282±0.00 2.009±0.00 30.245±13.66 26.402±21.37 22.234±20.26 24.856±0.00 27.655±19.74 18.448±9.15 24.305±20.25 34.302±25.90 48.529±33.09 36.775±7.74 98.419±0.00
ENST00000394765 N/A N/A 3.660±0.00 N/A N/A 4.630±0.00 2.896±0.00 2.270±0.00 N/A 2.038±0.00 5.998±0.00 34.981±24.15 43.244±6.45 N/A
ENST00000587009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587324 62.052±0.00 N/A N/A N/A 51.835±0.00 41.569±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591919 N/A N/A N/A 26.947±0.00 15.679±0.00 15.283±0.00 12.607±0.00 25.430±0.00 12.233±0.00 21.132±0.00 47.936±0.00 34.903±0.00 72.423±0.00 60.461±27.34
ENST00000592358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002835 ENSMUST00000002914 3.894±0.24 N/A N/A 5.377±1.10 N/A 3.939±0.43 N/A N/A 10.797±5.53 N/A N/A 8.982±1.91 13.380±11.36 71.540±37.24
ENSMUSG00000019578 ENSMUST00000019722 3.778±0.12 N/A 4.032±0.00 15.393±6.10 4.540±0.44 4.205±0.58 N/A 3.194±0.37 8.920±3.11 4.405±1.62 2.595±0.00 9.661±3.55 12.991±3.71 63.093±28.57
ENSMUST00000132804 N/A N/A 3.254±0.00 N/A 4.220±0.90 N/A N/A N/A N/A 3.064±0.00 N/A 4.568±0.16 2.295±0.00 N/A
ENSMUST00000134441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139371 N/A 30.656±6.77 N/A N/A N/A N/A N/A N/A N/A 19.453±0.00 N/A N/A 33.834±0.00 170.621±15.06
ENSMUST00000146467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151943 7.235±1.47 13.677±4.28 7.401±0.99 9.449±3.04 8.034±1.65 7.133±1.90 4.368±0.48 6.574±1.81 4.195±1.37 9.250±3.17 4.657±0.52 12.422±4.13 7.300±0.00 37.429±6.96
ENSMUST00000153947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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