C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UBX domain protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167671 UBXN6 9606 - 19:4444999-4457822 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301281 UBXN6-002 4445006-4457822 protein_coding
  ENST00000394765 UBXN6-001 4445010-4455298 protein_coding
  ENST00000587009 UBXN6-004 4445010-4448116 retained_intron
  ENST00000587324 UBXN6-009 4445476-4446698 retained_intron
  ENST00000588238 UBXN6-005 4445007-4449604 retained_intron
  ENST00000590466 UBXN6-006 4445091-4446620 protein_coding
  ENST00000591919 UBXN6-003 4444999-4454093 protein_coding
  ENST00000592358 UBXN6-007 4447839-4452412 retained_intron
  ENST00000592515 UBXN6-010 4448396-4455438 protein_coding
  ENST00000593024 UBXN6-008 4447550-4448870 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301281ENST00000394765ENST00000587324ENST00000591919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301281 69.064±0.00 55.282±0.00 2.009±0.00 30.245±13.66 26.402±21.37 22.234±20.26 24.856±0.00 27.655±19.74 18.448±9.15 24.305±20.25 34.302±25.90 48.529±33.09 36.775±7.74 98.419±0.00
ENST00000394765 N/A N/A 3.660±0.00 N/A N/A 4.630±0.00 2.896±0.00 2.270±0.00 N/A 2.038±0.00 5.998±0.00 34.981±24.15 43.244±6.45 N/A
ENST00000587324 62.052±0.00 N/A N/A N/A 51.835±0.00 41.569±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591919 N/A N/A N/A 26.947±0.00 15.679±0.00 15.283±0.00 12.607±0.00 25.430±0.00 12.233±0.00 21.132±0.00 47.936±0.00 34.903±0.00 72.423±0.00 60.461±27.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00036Q CIL_00036Q_0001 CGP 19:4360370-4445018
CIL_0001RW CIL_0001RW_0001 CGP 19:4402662-4457822
CIL_0002Z9 CIL_0002Z9_0001 CGP 19:4444999-4502211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003087 ubxn6 UBX domain protein 6 protein_coding Danio_rerio
ENSMUSG00000019578 Ubxn6 UBX domain protein 6 protein_coding Mus_musculus

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