C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UBX domain protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019578 Ubxn6 10090 - 17:56067045-56075028 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019722 Ubxn6-001 56067045-56075028 protein_coding
  ENSMUST00000132804 Ubxn6-003 56068250-56072232 retained_intron
  ENSMUST00000134441 Ubxn6-007 56068536-56069434 retained_intron
  ENSMUST00000139371 Ubxn6-004 56070644-56074547 protein_coding
  ENSMUST00000146467 Ubxn6-005 56070118-56074848 retained_intron
  ENSMUST00000151943 Ubxn6-002 56068250-56075017 retained_intron
  ENSMUST00000153947 Ubxn6-006 56069638-56072440 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019722ENSMUST00000132804ENSMUST00000139371ENSMUST00000151943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019722 3.778±0.12 N/A 4.032±0.00 15.393±6.10 4.540±0.44 4.205±0.58 N/A 3.194±0.37 8.920±3.11 4.405±1.62 2.595±0.00 9.661±3.55 12.991±3.71 63.093±28.57
ENSMUST00000132804 N/A N/A 3.254±0.00 N/A 4.220±0.90 N/A N/A N/A N/A 3.064±0.00 N/A 4.568±0.16 2.295±0.00 N/A
ENSMUST00000139371 N/A 30.656±6.77 N/A N/A N/A N/A N/A N/A N/A 19.453±0.00 N/A N/A 33.834±0.00 170.621±15.06
ENSMUST00000151943 7.235±1.47 13.677±4.28 7.401±0.99 9.449±3.04 8.034±1.65 7.133±1.90 4.368±0.48 6.574±1.81 4.195±1.37 9.250±3.17 4.657±0.52 12.422±4.13 7.300±0.00 37.429±6.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00036Q CIL_00036Q_0002 CGP 17:56016753-56068026
CIL_0001RW CIL_0001RW_0002 CGP 17:56040416-56075028
CIL_0002Z9 CIL_0002Z9_0002 CGP 17:56067045-56100596

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003087 ubxn6 UBX domain protein 6 protein_coding Danio_rerio
ENSG00000167671 UBXN6 UBX domain protein 6 protein_coding Homo_sapiens

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