C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301364 TSR1-002 ENSG00000167721 9606 - 17:2322503-2337507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301364
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301364 9.367±0.00 34.583±0.00 2.305±0.00 4.330±0.00 9.849±5.30 5.481±2.74 5.613±3.62 4.524±2.98 4.330±0.00 5.051±0.00 19.860±0.00 10.909±2.63 10.727±4.69 18.767±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0042254 IEA ribosome biogenesis
GO:0042255 ISS ribosome assembly
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045807 Tsr1-001 protein_coding Mus_musculus 0 2403
ENSMUST00000128230 Tsr1-006 nonsense_mediated_decay Mus_musculus 0 2039
ENSMUST00000155702 Tsr1-004 nonsense_mediated_decay Mus_musculus 0 1317
ENSMUST00000155785 Tsr1-003 retained_intron Mus_musculus 0 1061
ENSMUST00000153316 Tsr1-005 nonsense_mediated_decay Mus_musculus 0 754
ENSMUST00000130910 Tsr1-002 retained_intron Mus_musculus 0 569
ENSMUST00000173657 Gm20426-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000108447 Srr-003 protein_coding Mus_musculus 0 291
ENSMUST00000065211 Srr-201 protein_coding Mus_musculus 0 287
ENSMUST00000127499 Srr-006 processed_transcript Mus_musculus 0 287
ENSMUST00000121738 Srr-002 protein_coding Mus_musculus 0 287
ENSMUST00000108448 Srr-001 protein_coding Mus_musculus 0 287

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