C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: integrin alpha FG-GAP repeat containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167930 ITFG3 9606 + 16:234546-268971 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301678 ITFG3-003 234846-266120 protein_coding
  ENST00000301679 ITFG3-002 234802-268971 protein_coding
  ENST00000399932 ITFG3-001 234546-266125 protein_coding
  ENST00000417499 ITFG3-008 240188-254619 protein_coding
  ENST00000419173 ITFG3-017 234818-259521 protein_coding
  ENST00000420046 ITFG3-009 234844-261505 protein_coding
  ENST00000420500 ITFG3-016 234847-260009 protein_coding
  ENST00000421000 ITFG3-013 254628-260788 protein_coding
  ENST00000424016 ITFG3-014 262508-265090 protein_coding
  ENST00000426695 ITFG3-005 234827-254565 protein_coding
  ENST00000438220 ITFG3-006 234829-260003 protein_coding
  ENST00000447499 ITFG3-007 234830-254674 protein_coding
  ENST00000449945 ITFG3-010 234838-262139 protein_coding
  ENST00000453430 ITFG3-004 234834-261514 protein_coding
  ENST00000468354 ITFG3-012 261205-262244 retained_intron
  ENST00000496874 ITFG3-011 254122-259520 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301678ENST00000301679ENST00000399932ENST00000420046ENST00000421000ENST00000449945ENST00000453430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301678 34.094±0.00 19.018±0.00 0.843±0.00 17.227±0.00 28.388±27.04 12.692±11.35 12.360±11.45 9.283±8.65 6.446±5.29 10.259±0.00 63.328±0.00 19.148±5.63 29.466±6.34 31.012±5.39
ENST00000301679 N/A N/A 1.100±0.00 N/A N/A N/A N/A 2.101±0.00 N/A N/A N/A N/A N/A N/A
ENST00000399932 N/A 3.630±0.00 N/A N/A N/A 4.901±0.00 6.627±0.00 N/A 1.195±0.68 5.237±0.00 6.569±0.00 9.779±9.47 22.156±1.14 N/A
ENST00000420046 N/A N/A N/A N/A 2.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421000 N/A N/A N/A N/A N/A 3.948±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449945 N/A N/A N/A N/A N/A N/A 2.079±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000453430 N/A N/A N/A N/A N/A N/A N/A 1.136±0.00 2.843±0.00 N/A N/A 1.240±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071449 ITFG3 integrin alpha FG-GAP repeat containing 3 protein_coding Danio_rerio
ENSMUSG00000024187 Itfg3 integrin alpha FG-GAP repeat containing 3 protein_coding Mus_musculus

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