C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: integrin alpha FG-GAP repeat containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024187 Itfg3 10090 - 17:26211822-26244223 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114988 Itfg3-001 26211822-26244223 protein_coding
  ENSMUST00000118487 Itfg3-002 26212713-26244141 protein_coding
  ENSMUST00000141240 Itfg3-004 26213544-26216234 protein_coding
  ENSMUST00000151293 Itfg3-005 26218279-26220580 protein_coding
  ENSMUST00000153582 Itfg3-003 26215207-26216958 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114988ENSMUST00000118487ENSMUST00000151293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114988 5.307±1.09 8.568±3.05 3.517±0.11 1.363±0.00 4.501±1.31 19.099±1.85 3.805±0.53 4.350±0.81 2.728±1.15 4.467±0.91 1.455±0.17 7.163±1.86 8.587±7.34 2.716±0.27
ENSMUST00000118487 31.367±17.80 28.877±14.76 31.714±4.62 7.567±2.92 16.116±5.27 73.311±7.58 17.509±1.81 30.569±4.02 8.240±4.24 11.494±2.54 10.758±1.84 27.470±10.18 24.891±27.17 14.784±6.84
ENSMUST00000151293 N/A N/A N/A 16.522±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 119.845±69.83 31.661±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_0002RY CIL_0002RY_0002 CGP 17:26211822-26285504

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071449 ITFG3 integrin alpha FG-GAP repeat containing 3 protein_coding Danio_rerio
ENSG00000167930 ITFG3 integrin alpha FG-GAP repeat containing 3 protein_coding Homo_sapiens
ENSG00000269881 ITFG3 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000471331}; cDNA FLJ60496 {ECO:0000313|EMBL:BAG57772.1} protein_coding Homo_sapiens

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