C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine repetitive matrix 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167978 SRRM2 9606 + 16:2752329-2772538 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301740 SRRM2-001 2752329-2771412 protein_coding
  ENST00000570539 SRRM2-032 2770911-2771412 protein_coding
  ENST00000570655 SRRM2-015 2758924-2759843 retained_intron
  ENST00000570705 SRRM2-025 2768551-2769454 retained_intron
  ENST00000570971 SRRM2-013 2757476-2760845 protein_coding
  ENST00000571041 SRRM2-024 2768528-2769422 retained_intron
  ENST00000571372 SRRM2-030 2758908-2759548 retained_intron
  ENST00000571378 SRRM2-007 2752716-2763501 protein_coding
  ENST00000572278 SRRM2-017 2759747-2761810 processed_transcript
  ENST00000572721 SRRM2-021 2767856-2768939 processed_transcript
  ENST00000572883 SRRM2-020 2767722-2769248 nonsense_mediated_decay
  ENST00000572952 SRRM2-018 2760033-2762211 retained_intron
  ENST00000573311 SRRM2-023 2768081-2769547 retained_intron
  ENST00000573451 SRRM2-014 2758854-2759731 retained_intron
  ENST00000573498 SRRM2-016 2758948-2761807 retained_intron
  ENST00000573583 SRRM2-033 2771278-2772538 processed_transcript
  ENST00000573692 SRRM2-031 2770355-2771410 nonsense_mediated_decay
  ENST00000574331 SRRM2-010 2769374-2771410 retained_intron
  ENST00000574340 SRRM2-012 2753443-2757574 protein_coding
  ENST00000574593 SRRM2-022 2767507-2770258 processed_transcript
  ENST00000574866 SRRM2-027 2769895-2770934 processed_transcript
  ENST00000575009 SRRM2-006 2752638-2761707 protein_coding
  ENST00000575701 SRRM2-011 2752662-2757873 retained_intron
  ENST00000575870 SRRM2-029 2757832-2760010 processed_transcript
  ENST00000576076 SRRM2-009 2759933-2760846 retained_intron
  ENST00000576415 SRRM2-028 2752714-2758524 protein_coding
  ENST00000576674 SRRM2-019 2763867-2765368 processed_transcript
  ENST00000576878 SRRM2-026 2768746-2770229 retained_intron
  ENST00000576894 SRRM2-004 2752662-2760621 retained_intron
  ENST00000576924 SRRM2-003 2752626-2763582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301740ENST00000574331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301740 56.339±0.00 53.510±0.00 19.938±0.00 28.207±15.51 35.891±9.44 42.864±0.41 21.204±13.93 34.380±12.75 16.023±0.89 54.158±20.05 42.440±30.93 89.464±33.21 23.540±5.72 63.166±7.17
ENST00000574331 N/A 117.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0001 CGP 16:2752329-2777297

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005634 IDA nucleus
GO:0015030 IDA Cajal body
GO:0016607 IDA nuclear speck
GO:0044822 IDA poly(A) RNA binding
GO:0047485 IPI protein N-terminus binding
GO:0070742 IDA C2H2 zinc finger domain binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037965 srrm2 serine/arginine repetitive matrix 2 protein_coding Danio_rerio
ENSMUSG00000039218 Srrm2 serine/arginine repetitive matrix 2 protein_coding Mus_musculus

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