C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301740 SRRM2-001 ENSG00000167978 9606 + 16:2752329-2771412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301740 56.339±0.00 53.510±0.00 19.938±0.00 28.207±15.51 35.891±9.44 42.864±0.41 21.204±13.93 34.380±12.75 16.023±0.89 54.158±20.05 42.440±30.93 89.464±33.21 23.540±5.72 63.166±7.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0001 CGP 16:2752329-2777297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005634 IDA nucleus
GO:0015030 IDA Cajal body
GO:0016607 IDA nuclear speck
GO:0044822 IDA poly(A) RNA binding
GO:0047485 IPI protein N-terminus binding
GO:0070742 IDA C2H2 zinc finger domain binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088621 Srrm2-001 protein_coding Mus_musculus 0 5033
ENSMUST00000190686 Srrm2-002 protein_coding Mus_musculus 0 5033
ENSMUST00000186914 Srrm2-004 processed_transcript Mus_musculus 0 2453
ENSMUST00000189977 Srrm2-003 retained_intron Mus_musculus 0 1519
ENSMUST00000186961 Srrm2-012 protein_coding Mus_musculus 0 809
ENSMUST00000160730 Gm16581-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000191385 Srrm2-006 protein_coding Mus_musculus 0 418
ENSMUST00000190293 Srrm2-007 retained_intron Mus_musculus 0 313
ENSMUST00000186259 Srrm2-009 nonsense_mediated_decay Mus_musculus 0 309

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