C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine repetitive matrix 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039218 Srrm2 10090 + 17:23790662-23824741 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088621 Srrm2-001 23803221-23824741 protein_coding
  ENSMUST00000186045 Srrm2-008 23811672-23812600 nonsense_mediated_decay
  ENSMUST00000186259 Srrm2-009 23821387-23822660 nonsense_mediated_decay
  ENSMUST00000186914 Srrm2-004 23819308-23822528 processed_transcript
  ENSMUST00000186961 Srrm2-012 23790662-23808518 protein_coding
  ENSMUST00000189977 Srrm2-003 23811900-23816492 retained_intron
  ENSMUST00000190293 Srrm2-007 23808098-23808708 retained_intron
  ENSMUST00000190568 Srrm2-010 23823525-23824327 retained_intron
  ENSMUST00000190686 Srrm2-002 23803187-23824736 protein_coding
  ENSMUST00000191385 Srrm2-006 23807918-23810006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088621ENSMUST00000186914ENSMUST00000189977ENSMUST00000190686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088621 12.172±0.00 N/A N/A N/A 44.651±15.61 N/A 10.789±0.68 8.885±0.00 12.181±0.00 20.583±0.00 8.182±1.53 95.745±10.87 14.484±7.60 12.571±0.00
ENSMUST00000186914 77.462±15.83 212.816±16.89 88.210±3.37 112.693±22.98 146.177±19.27 111.427±12.89 34.424±5.39 45.638±15.59 33.468±12.53 103.331±5.31 N/A 163.162±21.70 20.159±2.82 40.952±1.75
ENSMUST00000189977 N/A N/A N/A 73.381±0.00 N/A N/A N/A N/A N/A N/A N/A 95.131±0.00 N/A N/A
ENSMUST00000190686 28.675±16.04 39.801±3.76 65.376±4.17 67.317±22.14 27.588±4.10 21.079±0.12 7.973±3.05 19.944±8.15 19.749±9.06 26.279±1.60 22.872±4.19 54.090±15.04 25.800±15.99 21.766±3.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0002 CGP 17:23790662-23829109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0015030 IEA Cajal body
GO:0016607 IEA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0047485 IEA protein N-terminus binding
GO:0070742 IEA C2H2 zinc finger domain binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037965 srrm2 serine/arginine repetitive matrix 2 protein_coding Danio_rerio
ENSG00000167978 SRRM2 serine/arginine repetitive matrix 2 protein_coding Homo_sapiens

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