C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BMI1 proto-oncogene, polycomb ring finger
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168283 BMI1 9606 + 10:22321211-22331484 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376663 BMI1-001 22321211-22331484 protein_coding
  ENST00000416820 BMI1-008 22325657-22327791 protein_coding
  ENST00000442508 BMI1-002 22322106-22328160 protein_coding
  ENST00000443519 BMI1-005 22326519-22329398 protein_coding
  ENST00000456675 BMI1-011 22321585-22327804 retained_intron
  ENST00000490311 BMI1-007 22327946-22329491 retained_intron
  ENST00000496174 BMI1-006 22327882-22329090 retained_intron
  ENST00000602358 BMI1-010 22325670-22328671 retained_intron
  ENST00000602523 BMI1-009 22321459-22326940 retained_intron
  ENST00000602524 BMI1-012 22325933-22326831 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376663ENST00000490311ENST00000496174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376663 12.161±0.00 16.408±0.00 1.233±0.00 12.103±4.91 11.410±1.41 11.968±10.63 4.909±1.91 11.313±7.87 4.579±0.42 5.497±2.37 5.955±4.46 8.379±3.94 5.590±1.17 17.935±0.33
ENST00000490311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.748±0.00 N/A N/A N/A
ENST00000496174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.993±0.00 56.846±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000780 CIL_000780_0002 CGP 10:22315974-22329542
CIL_000783 CIL_000783_0002 CGP 10:22321211-22454224

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0000792 IEA heterochromatin
GO:0001501 IEA skeletal system development
GO:0001701 IEA in utero embryonic development
GO:0003682 IEA chromatin binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006306 IEA DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0006959 IEA humoral immune response
GO:0007379 TAS segment specification
GO:0007420 IEA brain development
GO:0008270 IEA:IDA zinc ion binding
GO:0010468 IMP regulation of gene expression
GO:0016568 IEA chromatin modification
GO:0016573 IEA histone acetylation
GO:0016574 IEA histone ubiquitination
GO:0016604 IEA nuclear body
GO:0021903 IEA rostrocaudal neural tube patterning
GO:0030097 IEP hemopoiesis
GO:0030890 IEA positive regulation of B cell proliferation
GO:0031519 IDA PcG protein complex
GO:0033092 IEA positive regulation of immature T cell proliferation in thymus
GO:0035102 IDA PRC1 complex
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0048103 IEA somatic stem cell division
GO:0048146 IMP positive regulation of fibroblast proliferation
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0051443 IDA positive regulation of ubiquitin-protein transferase activity
GO:0071535 IPI RING-like zinc finger domain binding
GO:2001234 IEA negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006010 bmi1a B lymphoma Mo-MLV insertion region 1a protein_coding Danio_rerio
ENSDARG00000013076 bmi1b B lymphoma Mo-MLV insertion region 1b protein_coding Danio_rerio
ENSMUSG00000026739 Bmi1 Bmi1 polycomb ring finger oncogene protein_coding Mus_musculus

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